RnoINT0153320 @ rn6
Intron Retention
Gene
ENSRNOG00000002005 | Tmprss11f
Description
transmembrane serine protease 11F [Source:RGD Symbol;Acc:1560675]
Coordinates
chr14:23993344-23995221:-
Coord C1 exon
chr14:23995183-23995221
Coord A exon
chr14:23993546-23995182
Coord C2 exon
chr14:23993344-23993545
Length
1637 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
ACTGTGTGTTTCTTTGTCAGGAT
3' ss Score
9.65
Exon sequences
Seq C1 exon
CCATTGACAGCAAAAAGATGAGAAATCTTCTCAACAGTC
Seq A exon
GTAAGTTCCAAAATTATTTATTTTATAATAAACAGAATAGATAAGAATCATAAATAATTAGTACAGATCATCAACATTTTCCTTCTTATACTTTCATAAATCAAGTACTTATTCTTTTAACTTTTATTGTATACTTAACATATTAGACATATATAATATGACTTTGTATTGTTCTGGAATATATATATATATATATATATATATATATGTCTCATAGTATTCCAGATGCTATATTACAATTCTAAAAGTATCATTAATATTCTCTCATAATTCAAGAGAGGACCAAGTTGAAGTTTTTCTTGTTACTTTTAAGGCTTTATCATTTTATGTTTTTTGAGGTTTGTTTCCTGCTTCTCATGTGAATATATTTTGAGTTTCTGTAGGCAAATATGTGCCTATTATCAATGTTGTGAGAACACATGCAAGTCTTTTTAAAGGCTGGCTTGAAGTTTGGTTAATTGAAGATTTGATATCAGGGAATAATAATTTTTCTAAACTACTCTTATATTTTAGAAAATGAAAAATATTATTATTTAAATTAAAAATAGGCTAAGGATAATAGTCTCTTGTCACATGAAGGACAAATTAAGACATCTATTCAGAGTTGGGTTTCCTGAAGAGTAAAGTACTCTTGGCTAAAATGTGGAACCTCCTAATGCCTTATTCTACTCTGTTACTCATTAGCTTGGATGCACAGCAATTTGTGTCCCTCTCCAAGGTTGGGCTTTCTTAGCTAACAACTATACTGCTATATATCTATGTAAAGTAATTAAAATAATATCCAGACTTTTTGATGCTCACTAATGACCTATGTGTTGGTAAAAAGAAAAACAAAATGGCTCTAGAATGGCCAACAGTAAAACAAAAATCCTTTTCGGAACCGTAATTACATGCTATCATGGGCAGATTACCACAAGGATATTTCACATCCAGAAATATCAAGCTACTATATGGAATGTTTTCCCCGGTCTAACTACACCTTAGTAGGTATAAGGCACACCATATTGTTCAGTTTGTTTTTTGACTTAGACTTGCAAAATTCAAGATTATCAGAGTTTGCATTAGTTTCTAATCTGTGAGCTTGCCCCAGTCCCATCTCTCTTCCTTAAAGGATGCTAAGTTAACACATCCACATTTGACATAAAAGCTCAGGGCCACCTTCCCTTGGCAGAACACTTGGTCAGTCTATGTGACTGCACTTTTTAGGTTCCAAATCTATTATGCATCCAACTTAAACTGTTTCCATTTTTGCTTGTCCTCTAAGATCATTTATTATTTTTTGTTTATATTACATTGTTTTTTTGTGAGACACTTAATTGGGTAGCCCTGACTAGCTTCAGACTGGCAAAATTCCTGTACAGGCATCTCAAATGCTGGGATTATAGCATGCCAGGCTGTATAAGATTTAGGCAGAGATAGAAATTGAGTTTTGAACTAAATGCCTAAGCGTAAAGATAAATATTGCCTCTGAATCTCAGAGCAACCAATACAATATATATGAAACAAGCCAGAGACTGCATGCTAAGAACAGGTTAAAGAGTTGCAGAGGCAAAGAATTTTCTAATTATACTCTCTAAACACAAACCATGATTCTTTTTCTTATCATGAGAATAAACGACTGTGTGTTTCTTTGTCAG
Seq C2 exon
GATGTGGGATAAGAATGTCATCTTCCAACATCCCATTACCAGCATCCTCTACTACTGAACGAATTGTCCAAGGGAGGGAAACAGCTATGGAAGGGGAGTGGCCATGGCAGGCTAGCCTACAGCTCATAGGGGCTGGCCATCAGTGTGGAGCCACGCTCATCAGCAACACATGGCTGCTCACAGCAGCTCATTGCTTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002005:ENSRNOT00000002745:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.3=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACAGCAAAAAGATGAGA
R:
GCAATGAGCTGCTGTGAGC
Band lengths:
233-1870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]