HsaEX1041393 @ hg38
Exon Skipping
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113693071-113694640:-
Coord C1 exon
chr11:113694478-113694640
Coord A exon
chr11:113693604-113693671
Coord C2 exon
chr11:113693071-113693132
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTGGTGCCGGACAGGGC
3' ss Score
6.45
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTATGCACAG
Seq A exon
GGCAGAGAGTGTAATCCCCATTTTACCGAGGCTGAGAGGGAGAAGTGCCTCTCCCATGATCACACACA
Seq C2 exon
TGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTCAACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682_MULTIEX3-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
A:
PF0008921=Trypsin=PD(31.8=87.5)
C2:
PF154941=SRCR_2=PD(9.3=13.1),PF0008921=Trypsin=PU(30.6=91.8)
Main Inclusion Isoform:
ENST00000299882fB28437
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTTCCCGGATAGTTGGT
R:
GGCGACGTCGTAGTCATGATT
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains