HsaEX1042291 @ hg38
Exon Skipping
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39130992-39133240:+
Coord C1 exon
chr3:39130992-39131095
Coord A exon
chr3:39131606-39131646
Coord C2 exon
chr3:39133052-39133240
Length
41 bp
Sequences
Splice sites
3' ss Seq
AATTCATACATTTTCTACAGTTC
3' ss Score
6.57
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TCCAAGACATCCCATCCATGATGAATGATGTTAAGTGCCTGCTTTTGCTGGCAAAGGTTTACAAGAGCCATAAAAAAGAAGCTGTGATAGAAACTTTGAACAAG
Seq A exon
TTCTAGAGGCTGAGAAGTTCAAGGTGGAGGAGCCACATCTG
Seq C2 exon
GCCTTGGACCTCCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACTGGCAGCCTCTATCTGCATCCAATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAGTCTTATAAGGATGTCTTCTCCTACTTGCCAACTGACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026_MULTIEX2-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(49.3=100)
A:
NO
C2:
PF134141=TPR_11=PD(7.2=7.9),PF145591=TPR_19=PU(36.8=39.7)
Main Inclusion Isoform:
ENST00000431162fB28994
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGGTTTACAAGAGCCA
R:
CAGATAGAGGCTGCCAGTTGC
Band lengths:
148-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains