HsaEX1042749 @ hg38
Exon Skipping
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin conjugating enzyme E2 Q2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr15:75843285-75854487:+
Coord C1 exon
chr15:75843285-75843846
Coord A exon
chr15:75844342-75844485
Coord C2 exon
chr15:75854386-75854487
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAGTTTGCGTTTAAGGAG
3' ss Score
4.57
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
Exon sequences
Seq C1 exon
TGAGGGGGACGGGGGCGGGGTGGGGGCAGCCCTTTCCCAGGCGGTAGCGGGGGCGGCGTCGCTGTTGCCCTTTTAAGCCGCGGGGCCGCCGCCTCCTGCCGCTGGAGTCGGTTACAAAGGAAGCGCCACCCAGGCCGCCACACGCCGAGGCTTCCGCGCCCCTCGCCATTTTCCAGCAGCGCTCGACGAGGCGGAGCCGCGAGAGCGCGGCCCAGGCCGGCCCCGCGGGGCGGTCGCGGCCGTGACGGCGGCTCCGGGCCCGGCTCCCCTTCCGCGCCCGGCTCCCCTTCCGCGCCCCTCCCGCCGGAGATGAGGGGAAGATGTCCGTGTCAGGGCTCAAGGCCGAGCTGAAGTTCCTGGCGTCCATCTTCGACAAGAACCACGAGCGATTCCGCATCGTCAGTTGGAAGCTGGACGAGCTGCACTGCCAGTTCCTGGTGCCGCAGCAGGGCAGCCCGCACTCGCTGCCGCCGCCACTCACGCTCCACTGCAACATCACG
Seq A exon
GAGAAACTGACAATGAGAATGGACTCGTTGACGGAGGAAAAGTTGGAATGCAGACTCTGGTGCTGTTTGAGCGACCCCTCTCCCCCGGGCCTGGCTGCGCGCTGCTGTGTTCTGGAAAGGAGCATAGTACCGTCGTTGCGGCAG
Seq C2 exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.245
Domain overlap (PFAM):
C1:
PF0577317=RWD=PU(50.9=98.3)
A:
NO
C2:
PF0577317=RWD=FE(28.4=100)
Main Inclusion Isoform:
ENST00000267938fB29217
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGATGAGGGGAAGATGT
R:
GGGTCTTCAGAATCCACAAACCA
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains