HsaEX1042993 @ hg38
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr8:35235457-35549510:+
Coord C1 exon
chr8:35235457-35235887
Coord A exon
chr8:35267842-35267886
Coord C2 exon
chr8:35549292-35549510
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATACGTATTTTTTTTTCAGAAA
3' ss Score
8.29
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CGGACTCTCGCCTCCGCTCCGTAGTTCGGGGCCCGGCAGCGGCGCGAGGGCTGGGAACTGCGCGGCGGGGACTGCGGGCGACTCCGGCATCCGCGCTGGCGGCAGCGGTCGCCGCGCCGTGGGAAGCTATGGGGACGCGCCCTTTCTCGGGGTGCCCATTCAGCGGCGGCTCGGAGCTCCCTGCCCCGCTGCTTTAGGAAGCGATCGTGGAGCAGAGTCACTCTCTGAAGACTCCCGAGACCCATTCGACTCGGGACCCTCATCGCCGACCCTTTCCCGGGCTCCCGGAGCGTGAAGAAGAGCCGCCCTCCGGAACGCGGCGAGGAGCATGGGGAGAGCGGCGGCCACCGCAGGCGGCGGCGGAGGGGCGCGCCGCTGGCTCCCGTGGCTGGGGCTGTGCTTCTGGGCGGCAGGGACCGCGGCTGCCCGAG
Seq A exon
AAAGGAAAATTGTTCCAGGTTTGCTGACCTTTTCTGTGGTGGCAA
Seq C2 exon
GAACTGACAATGGCGAAGCCCTTCCCGAATCCATCCCATCAGCTCCTGGGACACTGCCTCATTTCATAGAGGAGCCAGATGATGCTTATATTATCAAGAGCAACCCTATTGCACTCAGGTGCAAAGCGAGGCCAGCCATGCAGATATTCTTCAAATGCAACGGCGAGTGGGTCCATCAGAACGAGCACGTCTCTGAAGAGACTCTGGACGAGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687_MULTIEX1-2/6=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000404895fB29400
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCATGGGGAGAGCG
R:
GATGGATTCGGGAAGGGCTTC
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains