HsaEX1042995 @ hg38
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr8:35235457-35549510:+
Coord C1 exon
chr8:35235457-35235887
Coord A exon
chr8:35376235-35376434
Coord C2 exon
chr8:35549292-35549510
Length
200 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCTTTTTGCACTAGTTA
3' ss Score
6.08
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CGGACTCTCGCCTCCGCTCCGTAGTTCGGGGCCCGGCAGCGGCGCGAGGGCTGGGAACTGCGCGGCGGGGACTGCGGGCGACTCCGGCATCCGCGCTGGCGGCAGCGGTCGCCGCGCCGTGGGAAGCTATGGGGACGCGCCCTTTCTCGGGGTGCCCATTCAGCGGCGGCTCGGAGCTCCCTGCCCCGCTGCTTTAGGAAGCGATCGTGGAGCAGAGTCACTCTCTGAAGACTCCCGAGACCCATTCGACTCGGGACCCTCATCGCCGACCCTTTCCCGGGCTCCCGGAGCGTGAAGAAGAGCCGCCCTCCGGAACGCGGCGAGGAGCATGGGGAGAGCGGCGGCCACCGCAGGCGGCGGCGGAGGGGCGCGCCGCTGGCTCCCGTGGCTGGGGCTGTGCTTCTGGGCGGCAGGGACCGCGGCTGCCCGAG
Seq A exon
TTAGCAACAGCAACAGGAGAAAAGAGGAGTGTGTTGGAATTCCAAGTCCTTCCTGAAAGTCTTTTACCTAAAAGAAGAGATTATCATACCTTCTGACCACAGGCCAGAGAGAATTTTTACAGAATGATGTATTTGGTGAAGAACGAGTGATCCTGTTTCTGAAAAGTCCCATGTGGTGAGACTAAACCCCGGACCCAGGG
Seq C2 exon
GAACTGACAATGGCGAAGCCCTTCCCGAATCCATCCCATCAGCTCCTGGGACACTGCCTCATTTCATAGAGGAGCCAGATGATGCTTATATTATCAAGAGCAACCCTATTGCACTCAGGTGCAAAGCGAGGCCAGCCATGCAGATATTCTTCAAATGCAACGGCGAGTGGGTCCATCAGAACGAGCACGTCTCTGAAGAGACTCTGGACGAGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687_MULTIEX1-4/6=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.611 C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000404895fB29402
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGAGCAGAGTCACTCTC
R:
GAAATGAGGCAGTGTCCCAGG
Band lengths:
292-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains