HsaEX1043056 @ hg38
Exon Skipping
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:157876702-157918073:+
Coord C1 exon
chr2:157876702-157876728
Coord A exon
chr2:157877334-157877416
Coord C2 exon
chr2:157917973-157918073
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGTATTTTTATCTCTACAGGTT
3' ss Score
9.01
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GGCCGCGCGGCACGGGTGAGTGCCCAG
Seq A exon
GTTCATTCATGCAGAGGGCATTTATTGGGTGACTGCAGTACTGCAAAAGGTTGCAAAGGAAATGGAAGATCTGGTCCCTGCAG
Seq C2 exon
TCATAGTGGTAGGAAGCAAATGATTTCAAAGCCCAGATGATGACAGAGACCCATCTTGGAAGGGGCTTGGATCCCTGAGTCACTGCTTGGAGGAGAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains