HsaEX1044643 @ hg38
Exon Skipping
Gene
ENSG00000142065 | ZFP14
Description
ZFP14 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29312]
Coordinates
chr19:36337262-36360533:-
Coord C1 exon
chr19:36360435-36360533
Coord A exon
chr19:36340988-36341590
Coord C2 exon
chr19:36337262-36337396
Length
603 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTGTTTTCTTTCAGATT
3' ss Score
12.35
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG
Seq A exon
ATTTGGAGTCCAGATACAGGACCAATACTTTATCTCCAGAAAAGGACATTTATGAAATATATTCATTTCAGTGGGATATAATGGAAAGAATTAAAAGCTATAGCCTTCAGGGTTCCATTTTTAGGAATGATTGGGAATGCAAAAGCAAGATTGAGGGGGAAAAGGAACAACAAGAGGGATATTTTGGGCAAGTGAAAATTACCTCTGAAAAAATGACCACTTACAAAAGGCACAATTTTCTTACTGAGTATCAGATCGTTCATAATGGAGAAAAGGTGTATGAGTGTAAGGAGTGTAGGAAGACCTTTATTCGTCGCTCAACACTTAGTCAACACCTGAGAATTCATACTGGTGAGAAACCTTATAAGTGTAAGGAATGTGGGCAGGCCTTTAGACAGCGTGCACATCTTATTCGACATCACAAACTTCACACCGGTGAGAAACCCTATGAATGTAAGGAGTGTGGGAAGGCCTTTACAGTGCTCCAAGAACTTACTCAACATCAGAGACTTCATACGGGTGAAAAACCCTATGAATGTAAGGAATGTGGAAAGGCCTTTAGAGTACATCAGCAACTGGCTCGACATCAGAGAATTCACACTG
Seq C2 exon
TATTTTCTATTTGAGATTGGTTGAATCTGCACATATGGAGGGCTGGCTATAAAGGGCACCACAAGGAAGAAGCCAAACAGATCCAGAATGTGTGAAATTCTACAGAGCAAATTACCTGATTTCTTCAACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142065_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.020 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
C2:
NA
Main Skipping Isoform:
ENST00000270001fB30492
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCCATTTCTAAACCAGATGTG
R:
TAGTTGAAGAAATCAGGTAATTTGCT
Band lengths:
230-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains