HsaEX1044652 @ hg38

Exon Skipping

Gene

ENSG00000196670 | ZFP62

Description

ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]

Coordinates

chr5:180847611-180851493:-

Coord C1 exon

chr5:180851381-180851493

Coord A exon

chr5:180850228-180850432

Coord C2 exon

chr5:180847611-180848082

Length

205 bp

Sequences

Splice sites

3' ss Seq

ATAGCTCTCTTCTCATTCAGCAT

3' ss Score

6.61

5' ss Seq

AATGTAAGG

5' ss Score

6.17

Exon sequences

Seq C1 exon

TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAG

Seq A exon

CATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAAT

Seq C2 exon

TTTCAGATGAACTCCCATAATGAATGATGAATTTGTGATGAGGGATAACCTGGAAGTGGTATTCACACATTATGCTACAATAAAAGGTTCTACCGTGGAGAGGATTTTGACACATTCAGTAACTAATGGAACACACCGTCAACATGAATTCGCACCTTACATGACAGAAGTGATTCAGGGATTCCTATGAATAGAAATGCTGAGAAGGAACGCATTTTATTGCAGAAGCTAAAAAGCTAAAGTACCAGTCATCTAGAGAGAAGGAAATTAATGTTTCTTAATAATCCTGTTAAATGTTTGATTGTTTTTGGAATGTGTTATTGTAAAGATGTCATGCAGGACATGTATATGTTGTCTGTTGTAAAATGTTAACGAATACTTTGTTCAGGGCTCACTCTCTCTTTGTCATGAAAGCCAGCTCCTTGTGGCGAGGTAAAGTGGAATTCCAATAAAGAAATTCCTTAAATCAAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000196670_MULTIEX2-3/4=C1-C2

Average complexity

C1

Mappability confidence:

90%=100=100%

Protein Impact

5' UTR

No structure available

Features

Disorder rate (Iupred):

C1=0.188 A=NA C2=NA

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8)

A:

NA

C2:

NA

Main Inclusion Isoform:

ENSP00000423820

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSP00000426193

Other Skipping Isoforms:

NA

Associated events

HsaEX0072668

Conservation

Mouse

(mm10)

chr11:49216095-49216299

Mouse

(mm9)

No conservation detected

Rat

(rn6)

chr10:34491178-34491382

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

chrUn_JH376359:2429-2633

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr3:10781812-10782016

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GCACTGAGGATGAGGAACCAA

R:

GCGTTCCTTCTCAGCATTTCT

Band lengths:

308-513

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Autistic and control brains

Special

HsaEX1044652 @ hg38

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS