HsaEX0072668 @ hg38

Exon Skipping

Gene

ENSG00000196670 | ZFP62

Description

ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]

Coordinates

chr5:180847611-180851493:-

Coord C1 exon

chr5:180851381-180851493

Coord A exon

chr5:180849154-180849256

Coord C2 exon

chr5:180847611-180848082

Length

103 bp

Sequences

Splice sites

3' ss Seq

ACAGCTCTCTCCTTTCTCAGCAC

3' ss Score

7.77

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAG

Seq A exon

CACAAGAGGATCCACACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATCCACACAG

Seq C2 exon

TTTCAGATGAACTCCCATAATGAATGATGAATTTGTGATGAGGGATAACCTGGAAGTGGTATTCACACATTATGCTACAATAAAAGGTTCTACCGTGGAGAGGATTTTGACACATTCAGTAACTAATGGAACACACCGTCAACATGAATTCGCACCTTACATGACAGAAGTGATTCAGGGATTCCTATGAATAGAAATGCTGAGAAGGAACGCATTTTATTGCAGAAGCTAAAAAGCTAAAGTACCAGTCATCTAGAGAGAAGGAAATTAATGTTTCTTAATAATCCTGTTAAATGTTTGATTGTTTTTGGAATGTGTTATTGTAAAGATGTCATGCAGGACATGTATATGTTGTCTGTTGTAAAATGTTAACGAATACTTTGTTCAGGGCTCACTCTCTCTTTGTCATGAAAGCCAGCTCCTTGTGGCGAGGTAAAGTGGAATTCCAATAAAGAAATTCCTTAAATCAAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000196670_MULTIEX2-4/4=C1-C2

Average complexity

C1*

Mappability confidence:

83%=100=100%

Protein Impact

5' UTR

Show structural model

Features

Disorder rate (Iupred):

C1=0.188 A=NA C2=NA

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8)

A:

NA

C2:

NA

Main Inclusion Isoform:

ENSP00000423820

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSP00000426193

Other Skipping Isoforms:

NA

Associated events

HsaEX1044652

Other assemblies

hg19

Conservation

Mouse

(mm10)

chr11:49217271-49217373

Mouse

(mm9)

No conservation detected

Rat

(rn6)

chr10:34492354-34492456

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

chrUn_JH376359:3884-3986

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr3:10780738-10780840

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

ACGAGCACTGAGGATGAGGAA

R:

GGTGCGAATTCATGTTGACGG

Band lengths:

255-358

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

The Cancer Genome Atlas (TCGA)
Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Special

HsaEX0072668 @ hg38

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS