HsaEX1044822 @ hg38
Exon Skipping
Gene
ENSG00000131127 | ZNF141
Description
zinc finger protein 141 [Source:HGNC Symbol;Acc:HGNC:12926]
Coordinates
chr4:378039-383268:+
Coord C1 exon
chr4:378039-378204
Coord A exon
chr4:378291-379269
Coord C2 exon
chr4:382621-383268
Length
979 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATTTATTTTAGATG
3' ss Score
8.91
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATCGCTTGAACCCAGGATGCAGAGGTTGCAGTGAGCTGATGTTGTGCCACTGCAGTGCAGCCTGCCAACAGAGTAAGACCCGTCTCAACAACAACAACAAAAAAGAAGAAAATTTTTAGGAGACAATG
Seq A exon
ATGGAGCCCCACTCTGTCACCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTTAACTGGGACTACAATCGCCTGCCACCACGCCCAGTTAATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTTTTGACCTCATGATCTGCCTGCCTTGGCCTCCTGAAGTACTGGGATTACAGGCATGAGCCACCGTGCCTGGCCAGAATATTATATCTTTGAGTGTGAATGTTAAATGGTGGAAAAACAATAGAATGATCTCTGTAGATTCAAAATCTGCACTGATCTTTTTTGTCCAGATTCATATTACAATCTTGAGGAATTTCTCATAATTCTTTGTTTTAGTGGATGCATTTCATGGGCTACAGTTTTCATTTTTACTCACCTAACTTTATCCAAGTCCTTGGTCACCTTCTCTGGAAAAAAATTTGAAGATTATGGCAGCTGTTGAATCCAAACAGTTTCTCAGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCTCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCACACCCAGCTAATTTTTGTATTTTTAATAGAGATGAGGTTTCACTCTGTTGGCCAGGCTGGTCTCGAGCTCCTGTCCTCGTGATCCACGCACGTCAGCCTCCCAAAGTGCTGGGATTACCGGTGTGAGCCACTGTGCCCAGCCTCTCAGTGATTTTTGATGCAAATTCATTTACTGTGTTCACGAAGTGGCCAATTTTGGGACCTTTAGCATCACTTGCCCTTTTAGTGTCTTACATATGTATGATTACCATCAGCACTAGAAATTCCAG
Seq C2 exon
TTTTTCCAAGAGACTTCAGAACCATTCCCTGGAGTGAATTATTTCCAATGGTGAAGAGTAATGGATGGATGGCATGAGATTCTCAAAAAAATCTTGCTCCTATTTCAGAAGTGTCACTCCAGCCCCTTGAAGGTCCAGGAAACCTGGCTGAGTAGTGTGGTCTATGGAGGTGCATGGGCTTCAGAATCAGGCCAACGTTGATCCTGAGTCCCAGCCAGCTGCTTAGTAGCTGTGGGATAGTTACACAAGACACATCTACAAGAAAAGTCATGATAAAATTGATTGCAAAAACAGCAATTTGAAAAATTTCTTATTGTATTCATGTCCTTGGAAATGGCTTTTATAGTCGTTCCTATCAAGAGACAGATTCTGTTTCCCAAACCTTGAACTTCTCTTGACTTATCTGCACTGGCACAGGGTGCCAGTTTGGGGCCCAGGTTTAAAGGTCCTAAATGCTTCTGTTATCTTTTTCAGAATTCTTCCATCTCTATGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131127-'25-25,'25-24,26-25
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000512994fB8059
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCGCTTGAACCCAGG
R:
GACTCAGGATCAACGTTGGCC
Band lengths:
343-1322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains