HsaEX7002447 @ hg38
Exon Skipping
Gene
ENSG00000131127 | ZNF141
Description
zinc finger protein 141 [Source:HGNC Symbol;Acc:HGNC:12926]
Coordinates
chr4:344335-383971:+
Coord C1 exon
chr4:344335-344430
Coord A exon
chr4:372664-373007
Coord C2 exon
chr4:383095-383971
Length
344 bp
Sequences
Splice sites
3' ss Seq
GTAATTTTTATTTCTTTCAGCTA
3' ss Score
8.09
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGTTGCTATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAAGAAAAGAGCCCTACAATGTGAAGATACATAAGATCGTAGCCAGACCCCCAG
Seq A exon
CTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTATACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTAAGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAAGCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTTTAAAGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATAAG
Seq C2 exon
AATTCTTCCATCTCTATGACAACAAGCCCATTTTAGCTTTCTGGAGAATAGCATCTGAGAAAAGCCAAAGTGCCTCAGTTTACAGACAGCTCACTCACAGAAGCAGAGCCACCTAATTCACCAGCATCTAACCACTCACACCTGAAGGAGCCAAACTGAGCCCAGAAGAATGGCCCGGCTGAGCCCAGCCTAAATTTCTAACCAGCTCAATCCTGAGCTAGTATGTTTCGGGATTGTTATGCAGTTATAAGTTAGTAATATATACACCCATTAAAGACAGGATCTCAGGACAGATTGATCACAAATAACCTGCAAATGCTTGCCACCCTGTAAGTATTGATTTTCTTTTTTCCTTTATTTAAAGTTAGATTTGTTGTAAGATGATATTGAGTTACACAGAAGTTAGGCAGGAGAATAGGGTTTGGAGGCAGGGAACTTAAGGCCAATTCGTGCTGACTTCCTACAAGAAAAAACACCAAGGTCTGGGAGCAGGGAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131127-'8-26,'8-21,20-26=AN
Average complexity
A_C3
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.288
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGATCGTAGCCAGACCCCC
R:
ACTTACAGGGTGGCAAGCATT
Band lengths:
358-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains