HsaEX1044841 @ hg38
Exon Skipping
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28088563-28091484:+
Coord C1 exon
chr6:28088563-28088673
Coord A exon
chr6:28091005-28091171
Coord C2 exon
chr6:28091254-28091484
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACATTTCAAAATCTTGTAAGGAG
3' ss Score
1.23
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATAATGAGAGTGAAAACAGTAGATCCATGCCAAAGCTGGAAATTTTTGAAAAAATTGAATCACAGAGAATTATATCTGGAAGAATCTCAGGATACATATCAGAAGCATCTG
Seq A exon
GAGCTGCGACCCGCTAGGACGGGAGCCTACTGCGCCCTCAAACCCCGCGGCGGCTCCCTCCCCGGAGGGGGCGCGTGAGGCCACCACCCAGAGCCTCTTCCTAGAGGAGCCGGAAGCATCGGGAGCCGCGGTACCCGCCCATCTTCCGGCCAGGATGTGTGGTCCTG
Seq C2 exon
GGTTCCTATTGATGGTTAGGAGCAGGATTTCGGGGATGAAGGCGGCAGCAGCAAGAGGAGGCTGCGACTGCGGACCCCAGATTCGTCCCCCTCCACCACACACAACGCCAAGACGGGCCCCAGGAGGGCGTGAAGAGAAGACTTCCTTTCCTCTCCTCTCGCCTCCTGGCGCTGGCCGTATGAAGGTGTCTCCCAGAAGCATTAGCAGAGGAGCCCTGTGGGAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279_MULTIEX2-1/4=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCATGCCAAAGCTGGAA
R:
GGCGAGAGGAGAGGAAAGGAA
Band lengths:
254-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains