HsaEX1044842 @ hg38
Exon Skipping
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28088563-28092946:+
Coord C1 exon
chr6:28088563-28088673
Coord A exon
chr6:28091254-28091484
Coord C2 exon
chr6:28092339-28092946
Length
231 bp
Sequences
Splice sites
3' ss Seq
ACACCTCTGACTTTTTTCAGGGT
3' ss Score
9.99
5' ss Seq
GAGGTGTAT
5' ss Score
1.65
Exon sequences
Seq C1 exon
ATAATGAGAGTGAAAACAGTAGATCCATGCCAAAGCTGGAAATTTTTGAAAAAATTGAATCACAGAGAATTATATCTGGAAGAATCTCAGGATACATATCAGAAGCATCTG
Seq A exon
GGTTCCTATTGATGGTTAGGAGCAGGATTTCGGGGATGAAGGCGGCAGCAGCAAGAGGAGGCTGCGACTGCGGACCCCAGATTCGTCCCCCTCCACCACACACAACGCCAAGACGGGCCCCAGGAGGGCGTGAAGAGAAGACTTCCTTTCCTCTCCTCTCGCCTCCTGGCGCTGGCCGTATGAAGGTGTCTCCCAGAAGCATTAGCAGAGGAGCCCTGTGGGAGAAATGAG
Seq C2 exon
GAGTGACCCAAAAGAAACTTGCTCAAGGACAGCCTCCTTAAAGCAGACTTCCATATACCCCAACCTGCAAAAGAAGACTTTACGTGAAATGTTACAGCCCATAACAGCTGCAGCCTTGACTATTAAATCTCAAAGGGAATAAAAAAGTCGCCTGACAGTTAAAGCAGAGGACTACACTTGGGGCCAAGAATATGGGCTACTTCATATGGAAGAACTCCAGCAACCGGGAGGTAGCTCATCAGAACGTTAGGCATTTCTGCTACCAGGAGACACCTGGACCCTGTAAGGCTGTGAGCTGATTCTGGGAACTTTGCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATCCTGGAATTGCTGGTGCTGGAGCAGTTCTTGACTATCCTGCCAGAGGAGCTCCAAGCCCGGATGTTAGAGCATCAGCCGGAGAACAGAGAGGAAATGGTGATCATATCGGAGGATTTGGAAAGAGAGCTTGATGAAACAGAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279_MULTIEX2-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGATCCATGCCAAAGCTGG
R:
TAGCCCATATTCTTGGCCCCA
Band lengths:
293-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains