HsaEX1045642 @ hg38
Exon Skipping
Gene
ENSG00000269293 | ZSCAN16-AS1
Description
ZSCAN16 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48982]
Coordinates
chr6:28087012-28137293:-
Coord C1 exon
chr6:28136745-28137293
Coord A exon
chr6:28123084-28123211
Coord C2 exon
chr6:28087012-28091468
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCCTTTGTTTTAGGAG
3' ss Score
12.07
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
TCGAAGCGGCAGCTCTGTAGGACCGCTCTTCTACCCCAAGATCCCTCGGCTTCGGCCCCCTAGGTGCCAGGGTCTGCGGGACCCCACGCTCAAAGCCGCCGGCCGGGGTCGACAACTGCAGAGAGGGTCGGGATAGGAAATTGCGGGTAGCGGCAGATGCGGGTCCCCAGGCATCCCGGAGGTTCCCACAGGTCTGCAGTGGGCCTACTTTGCGAAAAGGGCCCGGCTGCGCCGAGCCTCGTTCAAATCAGATGCCAGACAGTGTTTCTTGGGATCCATCCAAATAGGTCCCTTATTTCTCTTTGTGGGAGCCCTGGGCCTCCTTCCAGGCCGGAACCCAAGTGCTTAGGCAGCCGGGAAAGGCCGGTCCCCTTTTTCAGTTCTCTCGCGACCTCTAGCCACTTCCGGTTGCTAACGGTTCCCAAACAGCCCCCGAAAACGCTACGTGAGCTGGGCCCTGGGCCAGAGGCAGAAAACGGACGGAAGAAAAGGTCTGGCCG
Seq A exon
GAGATGGGTCTCACTCTGTCACCCAGACTGGAGTGCAGTGAGTGGTGCGATCATAGCTTACTGCAGCCTGAAACTCCTGGGCTCAAGTGATCTTCTCGCCTCAGCCTCCTGAGTAGCTGGAGCTACAG
Seq C2 exon
GGCTCCTCTGCTAATGCTTCTGGGAGACACCTTCATACGGCCAGCGCCAGGAGGCGAGAGGAGAGGAAAGGAAGTCTTCTCTTCACGCCCTCCTGGGGCCCGTCTTGGCGTTGTGTGTGGTGGAGGGGGACGAATCTGGGGTCCGCAGTCGCAGCCTCCTCTTGCTGCTGCCGCCTTCATCCCCGAAATCCTGCTCCTAACCATCAATAGGAACCCTGAAAAAAGTCAGAGGTGTGAAGTGCACACATAACCCTGGGCCACAAACTCGGTCCCGGACGCCACAGGACAATCGCTCACCAGGACCACACATCCTGGCCGGAAGATGGGCGGGTACCGCGGCTCCCGATGCTTCCGGCTCCTCTAGGAAGAGGCTCTGGGTGGTGGCCTCACGCGCCCCCTCCGGGGAGGGAGCCGCCGCGGGGTTTGAGGGCGCAGTAGGCTCCCGTCCTAGCGGGTCGCAGCTCCTTACAAGATTTTGAAATGTTGGTGGATTAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000269293_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCTTTGTGGGAGCCCTG
R:
CTGGCCGTATGAAGGTGTCTC
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains