HsaINT0188798 @ hg38
Intron Retention
Gene
ENSG00000196812 | ZSCAN16
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:HGNC:20813]
Coordinates
chr6:28124560-28125830:+
Coord C1 exon
chr6:28124560-28124677
Coord A exon
chr6:28124678-28125412
Coord C2 exon
chr6:28125413-28125830
Length
735 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTCTTTGACTCAATCCCAGATA
3' ss Score
6.06
Exon sequences
Seq C1 exon
CGGCCCGGAAGTGCCCGGCTGAAGCGGCCGGGCGCCGATTGGTGTCTTTGAGTCTAGTCTTTGTTCGGGGCTGTCCAAAGGACGCTAGCTGTTGCACCTGTTCCTCCCTGCGCGTAAG
Seq A exon
GTGAGTGTCTCCCGGCTCCCAGGTGGAGAAAAGGGGACAAGACGCAGCTGTGGTCAGCAGCAACACCCTCCCCACACCTCCCTGTCGCGGGCAGAGTGTAACACTCCTGTCCCTCCCTCCGCCCCCCAACAGATCTACAGGAGAGGATTTGGCCCAGCCTTCCGGGAGAGGATGGGTGGAAGGGGGACACTGGTTGCGGGTTCCTCTGCAGAGGCATCTGTCTGATCCCCTTCCAGGGTTGGCACACATATCCTATAACCAGTGAATCCTGGGGGCACAAGCTGGCCCGTGCATCTCATGGTAACAGAATGAAGAGCCTTTTAACAAAGCCGTTAATAATACTTGGCGTTTATTTAGTGCTTACTAGTGCCCGCTGCCATGCCAGGGACGTTGCATACGTTCTCATGTAATCTGTATATCAACCCTGTAACACACATGAGAATTGTACCTGAGGATCTGTAGTTCTAGTCCAGATAAATAACTTCCTCTAAGTTACACAATAGAGCACAGATTCAAATCATATCCCTGCGTCACTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCAGCTTCCTATAAGACTGTTTTCTCTGATTGACTTCTGGTGGCTTGGCTTCATTATGATGTGTTTATGTTCACAGAAATTTTTGTAATTTCTCTATGGTAACAACTTTTTATGCCTTAGGAGTGTCTCTGAGGCAGGATTCTAAGAGATTCTCTTTGACTCAATCCCAG
Seq C2 exon
ATAGAGGATAAATCTCCTGGCAAAGCCCAGAATGACCACAGCCCTGGAACCTGAGGACCAAAAAGGACTTCTGATAATTAAGGCAGAGGACCATTACTGGGGACAGGATTCCAGCTCACAAAAGTGCAGTCCTCACAGGAGGGAACTCTATAGACAACACTTCAGGAAGCTCTGCTATCAGGATGCACCTGGACCCCGTGAAGCTCTTACCCAGCTGTGGGAGCTCTGCCGTCAGTGGCTGAGGCCAGAATGCCACACCAAGGAGCAGATTTTAGACCTGCTGGTGCTAGAACAGTTCCTGAGCATTCTTCCTAAAGACCTGCAAGCATGGGTGCGTGCACACCATCCAGAGACTGGAGAGGAGGCAGTGACGGTACTGGAGGATCTGGAGAGAGAGCTTGATGAACCTGGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812:ENST00000340487:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.222
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGATTGGTGTCTTTGAGT
R:
AAATCTGCTCCTTGGTGTGGC
Band lengths:
358-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains