HsaALTA1053532-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000196812 | ZSCAN16
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:HGNC:20813]
Coordinates
chr6:28126783-28130082:+
Coord C1 exon
chr6:28126783-28126921
Coord A exon
chr6:28129372-28129429
Coord C2 exon
chr6:28129430-28130082
Length
58 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
ACATGTTCTTTCTTCCATAGGCT
3' ss Score
11.75
Exon sequences
Seq C1 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
Seq A exon
GCTGTTTGCTTCTCAAACATAGAATAGGACCCGTTTGTGTACTGTTTGTTTGTTACAG
Seq C2 exon
GTGATAAAACTAGGACTAAGAATGAAGAGTTGTTCCAGAAGGAAGATATGCCCAAAGACAAGGAATTCCTTGGGGAGATAAATGACAGACTGAACAAAGATACTCCTCAGCATCCTAAGTCCAAAGATATTATTGAAAATGAGGGCAGATCAGAATGGCAACAGAGGGAAAGAAGACGATATAAATGTGATGAATGTGGGAAAAGTTTCAGTCATAGCTCAGACCTTAGTAAACACAGGAGAACTCACACGGGAGAGAAGCCCTATAAATGTGATGAGTGTGGAAAAGCCTTCATTCAGCGCTCACATCTCATTGGACATCATAGAGTACACACGGGAGTAAAACCCTATAAATGTAAAGAATGTGGGAAAGACTTCAGTGGGCGCACAGGTCTTATTCAGCATCAGAGAATCCACACAGGTGAAAAACCCTATGAATGTGATGAGTGTGGAAGGCCTTTCCGAGTAAGTTCAGCTCTTATTAGACATCAAAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812-5-11,5-10,5-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF0013017=C1_1=WD(100=28.7),PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGACTGTCCAGCTCCAT
R:
AGGAATTCCTTGTCTTTGGGCA
Band lengths:
140-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains