HsaINT0188800 @ hg38
Intron Retention
Gene
ENSG00000196812 | ZSCAN16
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:HGNC:20813]
Coordinates
chr6:28126783-28130082:+
Coord C1 exon
chr6:28126783-28126921
Coord A exon
chr6:28126922-28129429
Coord C2 exon
chr6:28129430-28130082
Length
2508 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GTACTGTTTGTTTGTTACAGGTG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
Seq A exon
GTAAGCAGGAACAGTTCTGAGTGTATGAGGGTAGAGGTACTTCCTTAGGTTAGAGGAAAACTTTCTCACTTTCATCTTCTCCTTTTAAAGATTTCCTGCTTGTCCTCCACCTCACTATGGACAATTTTATCCTCCTCTTACCCTTGCTCCATGATGGAGTTATATTTTAGTTTCTCACTAGACAAAAAAGCTGCTATTTGGCCCAAGGGATGAGGATGGAGTTTATTTAATATCCTTATAATTCTGTTGTTATCTAATGATTCTTGTTCCAAATCCCCCTAAATTTCCATTTTGAGACAGGAGAACTTATGGCACTCTGTATTAGTCAGCGAGGCCTGTCATACAGAATACCATGGACTTATGGGTGGCTTAACAGAAATTTATTTTCTCACAGTTCTGGAGGCTGGAAGTCCAAGATGAATATGCTTACAGGGTTAGTTACTAGTAAGGCTACTCTCCTTGGCTTGCAGACCTCTTGCTGTGTCTTCACATGGCCTTTCTCTGTACACACACACTCCTGGTGTCTCTTCCTCTTGTAAGGACACTAGTACTATTGGATTAGGGTCCTACCCTTATGACCTTATTCAACCTTAATTACTTCATTAAAGCCCTATCGTCATATACAGTAATGTTTGAAAGGGGTTAGGGCTTCAATGTATGAATTTGTGGAGGAAGACAAGTCAATCTATAACACATTCCCATGATGAAAGAAGTAGGGAAGAGAGACAATGATCAGTCAATACAGCAAAGTTTCTTGTTTTTATCTGCATGTCAAATTAATTGGGTTTTATCCCCCATCCCAGCTCCCTAATTACAAACTAGGGTGTCTAGTGTATCCCCAGGCTACATTAAAAAGCTGGTGAATTTTAAATTCCAGTTTATCCAAACCCTACCTTTTTCAGTGCTCACCACCCTTTCTCTAGAGGCTCCCATGTCTAATAATGCCTCTCCGGGTAGTTCCTTATACTCTAGCCTATTTTGTATTCTTACTACTTAAGTTTTACCAATATCCCATCCTGTAGGATCCCTACCAGATGATTTGTCTAATCTGAAAAATTATTTTGAGCTAAGATGTTCCTAGCTGCTATCTGGAAAGGATGACATTTAATTATATGTAATGTAAAGAAGCCTTTCAGTGCTTTAACTCTAGGAGTGGAGTGCTGGTTACTGTTTGGCTTTAGAAGTGACGTTAAGAACCTCCTATCTGTTCTTTTTTATTTTTATTTTATTTTATTTTTTTTAGAGGAGAGGTCTCACTATGTTTCCCAGGCTTGTCTCAAACTCCTGGGCTCAAGTGATCTTTCCACCTTAGCTTCCCAAAGTGCTAGGATTATAAGCATGAGCCACTGTGCCTGGCTCAACCTGTCTTTTGATTCATTCATCTTTCACTGAGTATTTACTAAATAGCAGCTATATGCCAGACACTATACTAAATGTAAGGAATCCAAAGGTTAGACACTTACATTACTTCTCTTCAAGAAGCAGGAGAGTGAGCACTTACAATAGTGTAATAATTACCATACTAGAGATACACCGTGAACTACAAAGAGGATAGCTATCCCTGAGGTGCACCTGCAAAAATATCACAGAGTAGGCTTGCTTGAGCTGAGAAGGTCAGGTGGGAGCTGAAAGGGGGTGACATTTTAGGCAAAGAAACGGTGAAAAAAAATAGCATCAGAGAATAACATTCTAAGAATAGCAACTGCTCTGAGTTTGATTCTGATAAGGAGTCGTCTGTAGGAGGGAAAATCAGCAATGTGTGTTTTAATAAACGATCCAGCTGATTCTGATGCACAATAAGGTTAGAAACCACCGAGCTAGGATTTAGACAGGAGGTGATGACAGCAAGGACATCAGTTTCAGGAAAAAATATTTTACCCAGCATATACACTGACTATCCATTGTCATTTCCTATTCCTTTTCATTCCTCTATTTACTCTGACCTGCATGTTGTCATGCTTCCTGCTTCCAGCTAATTATTATCCTTCAAACACACTCCCCTCCTTGGATGGTTCCTATTCACTATATTCCTCTCAGACCCCAAATCCTATTATCCTCTCCATTCACTTTTACTTGATTTTACTTGCCACCTATGTTTCAGGCCCCTGCATGTTTCTCCCAAACTTTTACCTCCCTCCCCATCTCTGTTCTCCAGTCTCTCTAATTATCCTTGGCATATCTATAGTCCCCTCATTTATCCGTCTTCCCTTACATAGTATTGCTAACTTATCTCTTGAGCTCTATTTTTGCCTTTTCTTCTCTTAATCTACTCTCAAACAACTTGTTCTGCTGATATCTTCCTTAATTCTTAATTTCTTCCTTACATTGTGACTCTGTGCTATGATGATACCAAAAATAAGATGGTACCAAATATTTGATATGTGTGTTGTATGTGACTTCTCATTATTTTATAACACATTTATAACATTTACATGTTCTTTCTTCCATAGGCTGTTTGCTTCTCAAACATAGAATAGGACCCGTTTGTGTACTGTTTGTTTGTTACAG
Seq C2 exon
GTGATAAAACTAGGACTAAGAATGAAGAGTTGTTCCAGAAGGAAGATATGCCCAAAGACAAGGAATTCCTTGGGGAGATAAATGACAGACTGAACAAAGATACTCCTCAGCATCCTAAGTCCAAAGATATTATTGAAAATGAGGGCAGATCAGAATGGCAACAGAGGGAAAGAAGACGATATAAATGTGATGAATGTGGGAAAAGTTTCAGTCATAGCTCAGACCTTAGTAAACACAGGAGAACTCACACGGGAGAGAAGCCCTATAAATGTGATGAGTGTGGAAAAGCCTTCATTCAGCGCTCACATCTCATTGGACATCATAGAGTACACACGGGAGTAAAACCCTATAAATGTAAAGAATGTGGGAAAGACTTCAGTGGGCGCACAGGTCTTATTCAGCATCAGAGAATCCACACAGGTGAAAAACCCTATGAATGTGATGAGTGTGGAAGGCCTTTCCGAGTAAGTTCAGCTCTTATTAGACATCAAAGAATTCATACCGCAAATAAACTCTACTAATATAGCAGTAATATCAAAAGTTCTTTGGACACTCAGGCCTAACTAGTTATCAAAGAATCTATTTTAGAAACCTTGAGTTTCCTCAATGTGGTCAAAGCTTCAGTCATCATTAAACTTCTCTGGACCAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812:ENST00000340487:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF0013017=C1_1=WD(100=28.7),PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains