HsaINT0188800 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:28094561-28097856:+
Coord C1 exon
chr6:28094561-28094699
Coord A exon
chr6:28094700-28097207
Coord C2 exon
chr6:28097208-28097856
Length
2508 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GTACTGTTTGTTTGTTACAGGTG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
Seq A exon
GTAAGCAGGAACAGTTCTGAGTGTATGAGGGTAGAGGTACTTCCTTAGGTTAGAGGAAAACTTTCTCACTTTCATCTTCTCCTTTTAAAGATTTCCTGCTTGTCCTCCACCTCACTATGGACAATTTTATCCTCCTCTTACCCTTGCTCCATGATGGAGTTATATTTTAGTTTCTCACTAGACAAAAAAGCTGCTATTTGGCCCAAGGGATGAGGATGGAGTTTATTTAATATCCTTATAATTCTGTTGTTATCTAATGATTCTTGTTCCAAATCCCCCTAAATTTCCATTTTGAGACAGGAGAACTTATGGCACTCTGTATTAGTCAGCGAGGCCTGTCATACAGAATACCATGGACTTATGGGTGGCTTAACAGAAATTTATTTTCTCACAGTTCTGGAGGCTGGAAGTCCAAGATGAATATGCTTACAGGGTTAGTTACTAGTAAGGCTACTCTCCTTGGCTTGCAGACCTCTTGCTGTGTCTTCACATGGCCTTTCTCTGTACACACACACTCCTGGTGTCTCTTCCTCTTGTAAGGACACTAGTACTATTGGATTAGGGTCCTACCCTTATGACCTTATTCAACCTTAATTACTTCATTAAAGCCCTATCGTCATATACAGTAATGTTTGAAAGGGGTTAGGGCTTCAATGTATGAATTTGTGGAGGAAGACAAGTCAATCTATAACACATTCCCATGATGAAAGAAGTAGGGAAGAGAGACAATGATCAGTCAATACAGCAAAGTTTCTTGTTTTTATCTGCATGTCAAATTAATTGGGTTTTATCCCCCATCCCAGCTCCCTAATTACAAACTAGGGTGTCTAGTGTATCCCCAGGCTACATTAAAAAGCTGGTGAATTTTAAATTCCAGTTTATCCAAACCCTACCTTTTTCAGTGCTCACCACCCTTTCTCTAGAGGCTCCCATGTCTAATAATGCCTCTCCGGGTAGTTCCTTATACTCTAGCCTATTTTGTATTCTTACTACTTAAGTTTTACCAATATCCCATCCTGTAGGATCCCTACCAGATGATTTGTCTAATCTGAAAAATTATTTTGAGCTAAGATGTTCCTAGCTGCTATCTGGAAAGGATGACATTTAATTATATGTAATGTAAAGAAGCCTTTCAGTGCTTTAACTCTAGGAGTGGAGTGCTGGTTACTGTTTGGCTTTAGAAGTGACGTTAAGAACCTCCTATCTGTTCTTTTTTATTTTTATTTTATTTTATTTTTTTTAGAGGAGAGGTCTCACTATGTTTCCCAGGCTTGTCTCAAACTCCTGGGCTCAAGTGATCTTTCCACCTTAGCTTCCCAAAGTGCTAGGATTATAAGCATGAGCCACTGTGCCTGGCTCAACCTGTCTTTTGATTCATTCATCTTTCACTGAGTATTTACTAAATAGCAGCTATATGCCAGACACTATACTAAATGTAAGGAATCCAAAGGTTAGACACTTACATTACTTCTCTTCAAGAAGCAGGAGAGTGAGCACTTACAATAGTGTAATAATTACCATACTAGAGATACACCGTGAACTACAAAGAGGATAGCTATCCCTGAGGTGCACCTGCAAAAATATCACAGAGTAGGCTTGCTTGAGCTGAGAAGGTCAGGTGGGAGCTGAAAGGGGGTGACATTTTAGGCAAAGAAACGGTGAAAAAAAATAGCATCAGAGAATAACATTCTAAGAATAGCAACTGCTCTGAGTTTGATTCTGATAAGGAGTCGTCTGTAGGAGGGAAAATCAGCAATGTGTGTTTTAATAAACGATCCAGCTGATTCTGATGCACAATAAGGTTAGAAACCACCGAGCTAGGATTTAGACAGGAGGTGATGACAGCAAGGACATCAGTTTCAGGAAAAAATATTTTACCCAGCATATACACTGACTATCCATTGTCATTTCCTATTCCTTTTCATTCCTCTATTTACTCTGACCTGCATGTTGTCATGCTTCCTGCTTCCAGCTAATTATTATCCTTCAAACACACTCCCCTCCTTGGATGGTTCCTATTCACTATATTCCTCTCAGACCCCAAATCCTATTATCCTCTCCATTCACTTTTACTTGATTTTACTTGCCACCTATGTTTCAGGCCCCTGCATGTTTCTCCCAAACTTTTACCTCCCTCCCCATCTCTGTTCTCCAGTCTCTCTAATTATCCTTGGCATATCTATAGTCCCCTCATTTATCCGTCTTCCCTTACATAGTATTGCTAACTTATCTCTTGAGCTCTATTTTTGCCTTTTCTTCTCTTAATCTACTCTCAAACAACTTGTTCTGCTGATATCTTCCTTAATTCTTAATTTCTTCCTTACATTGTGACTCTGTGCTATGATGATACCAAAAATAAGATGGTACCAAATATTTGATATGTGTGTTGTATGTGACTTCTCATTATTTTATAACACATTTATAACATTTACATGTTCTTTCTTCCATAGGCTGTTTGCTTCTCAAACATAGAATAGGACCCGTTTGTGTACTGTTTGTTTGTTACAG
Seq C2 exon
GTGATAAAACTAGGACTAAGAATGAAGAGTTGTTCCAGAAGGAAGATATGCCCAAAGACAAGGAATTCCTTGGGGAGATAAATGACAGACTGAACAAAGATACTCCTCAGCATCCTAAGTCCAAAGATATTATTGAAAATGAGGGCAGATCAGAATGGCAACAGAGGGAAAGAAGACGATATAAATGTGATGAATGTGGGAAAAGTTTCAGTCATAGCTCAGACCTTAGTAAACACAGGAGAACTCACACGGGAGAGAAGCCCTATAAATGTGATGAGTGTGGAAAAGCCTTCATTCAGCGCTCACATCTCATTGGACATCATAGAGTACACACGGGAGTAAAACCCTATAAATGTAAAGAATGTGGGAAAGACTTCAGTGGGCGCACAGGTCTTATTCAGCATCAGAGAATCCACACAGGTGAAAAACCCTATGAATGTGATGAGTGTGGAAGGCCTTTCCGAGTAAGTTCAGCTCTTATTAGACATCAAAGAATTCATACCGCAAATAAACTCTACTAATATAGCAGTAATATCAAAAGTTCTTTGGACACTCAGGCCTAACTAGTTATCAAAGAATCTATTTTAGAAACCTTGAGTTTCCTCAATGTGGTCAAAGCTTCAGTCATCATTAAACTTCTCTGGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
-ZSCAN16:NM_025231:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)