BtaINT0166394 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031873 | ZSCAN16
Description
Bos taurus zinc finger and SCAN domain containing 16 (ZSCAN16), mRNA. [Source:RefSeq mRNA;Acc:NM_001034411]
Coordinates
chr23:30305069-30309644:-
Coord C1 exon
chr23:30309506-30309644
Coord A exon
chr23:30305720-30309505
Coord C2 exon
chr23:30305069-30305719
Length
3786 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACG
5' ss Score
6.05
3' ss Seq
ATACTGTACATTTGTTACAGGTG
3' ss Score
8.43
Exon sequences
Seq C1 exon
GTTCCAGGCAATTCAGAAAGACAGGACACACTTTTGGACAAGTTGGCCCCCTTGAGAAGGCCACATGAGTCATTGACTATCCAGCTTCATCCCAAGAAGACCTGTCAGGAGCAGAAATCTGGGGAGGCCCAAAGGAATG
Seq A exon
GTAACGTACAGGCGTTTGTATATATGAAGGAAGAGCTGGTTCCTTAGAGATGAGCTTCTTCATTTTCTTCTTCTCCTTTTTAAGTTTTTCTGCTTGTTCTTCACTTCATTGTGGAAGATTTTATCTCCCTTCCTCCCTTGACCTTATCATTAGACTTAGGTGCTATTTTTTAATGAGTCTTATGGGCAGGAGTTTCAGGAGGTAGAAGCTGAAAGATTCAGACCATTTTAATAAGCTTTAGTAAGCTTAACTTTATGGAATCTTCACTTATGTTCTGTAAGAAGCCATATAATAAGTTTCTCTCCTCACCTTTGGGAGATGACAGGACATGTACTTATAAAATAGTACACAATAATAATTAACATGTCAACATGCTAAATTCTATTGTGTATAACACAGGTTATTATTATGATGATTAATGGCTTGTCTGTGCAAAACTTTAAATTCTAGATGGTCTTTCCTTATGTTTTTATACAAATACTTCTGGACAGTTTCACTCTGCTTCTCATTAGTGTAAGTCCAGAAAAATACACACTTACTATACCTAAAATTGTAGAGGTTTACGTATGTGCTGCTACCAAAATATTCCATTTCAAGGGAATACTATGCAGTTAAAATATGAATTGTATTTTCTAATTCTAATCAGCTGAAAGATGCCTCATGAAATCTAGCTATCCTGTGAGGCCTGTGGATTCTTAGGGAAGTCCATTTTGTCTGCATTGAACAGTGTGAATATGACTTTTTTCTAAAGTACCACCCTGGCAACTTTTTAAATCTATATACCCCCCAACCAGGCTCCCCACCAAAAAACAGACAAGGGAAGAACAAAACAACTATCACACACACACACACACACAAACCCTGTAGAAATCACAGGAAATACATTTGAAGAAATGCCTCTCAACTTTATTAAAATAATATAATATCTGGTCCAAATCCTCATTTTACAGTTGAACAGATATACCCACAGTGGCTATGACTTTTCCAAGTTTCCATAGGAGTCACAGGGAGAGCTGGGGCTCCTGCCTACTAGTCCAGAACAATATTTTAAAACCATCATAGTAATAACCCAATAAAGCCAGTGTCTTTTAAAATAAATTTATTATTAAATAGACCTTTTTATGCAGGATCTTGTTTTAAAATTTTCATTCTATCCATATCAGCAAGATTATGAATATTATCTGTTGACTAGGATAATGAAACTCACCTCTGTAAACATAACTTGGAATTATAAGTGAGGTCATTTAATACAGAATTATCTTCATATATGAGAGAACTTGGAGAACTGAGTGTCTTGCAGTTCTTTCTAACACATTGTCAGGTATTTCAAAGGAAACTTTTTGGATATGCTATTAACCCACAACACTGACTCTCTGGTAGAAGTGATAGTCTCCCTAACTTTGTTCCTGTTTCACTTCACTCAGCATTTAACCTTGTCCTTTCCCTCTATACTGTCAACCAAGTTGTACATATGGTAATCAGATGATTTTTATGGACATATCCTCATCCCAGTGACCAGCAGGACTGGGCTCATCTGGAGTGATAAGGCAATTCATGGATGTACCAAAATAAAATTGGAAGAATAGCCCTGGCAGAAGATGCAAAAATGAAATAGTCCTAATCTTGTCTCTGAAACAGGATCACCTTATATCATATTAGACTGGGATTAGCTGGCAATTGGAAAAGATACATCAACAGAGCCCTGAAACTCCAGTTGGCCAAGTAAACTGCAGGTCCCTGAGATGAGTAAAGTTCACATTTGACAGTTTCCATACAATTTTCTTTACATTGTTTAATTGCAGATATAATGGAGAGGGTTATAATTTGAATTGCTAACCCTATATATTTTTTTGTAATTCTTTTGAAGTCTTGGTGAGGGATTTTCTCCAGACTTTTCTTGAAGTCATGGGAGAGAGATTCATCCTAAAGACTGGTAGATTCCTCTGAAGGTAGTAACTGACCACAGGTGCAAACTCTTTGTGTTCTTTTAAAAAAAAAAAAAAAAAACTCATCTTCATCAGTAAGCCACCAAAAACCAACTGTCAGTGCCTCCAGTATGTAAAAGCAGCAACTGAGCCAAGGTGTTGATGTTTGAAAACACTTTCTTAATGGTATGGTGTTATCTCTAATTTCCATGATTTGTTTAATGATCATTAACCTACTAACTTAGAAATACTTCTGCCACATATTATAATTTTCCACATGCTTTATCATACATTTCCTCATCTAATCAAACAATAGGTAAGGAGGAGGGTACAGAGATGATATGGAACCAAATGGTTATGATCTGCCAACATTTAAAGAGTTTTCAGTAGAGCCAGGACTGAAATCTTGACCTTCTGGCTCTAATCCAGTCCTTTTATTCTAGCCAGAGATAAAATGGTATTTAGATTCCAAAACAATATTATTTTAGAGCAAATAATCAAACTTAAAAAAAAAAATCTATTGCCTGATTAAAAATATGTATTGTAAAGAAGAAGGTAAAATTTGAGGAAGATTTGGTAGCAAGAGGATATTGTGATGACAGTGAAAAGTGGAGTTCACTCAGTCCAGAGCCAGTGTTTTCCATACCCAGCCCAGGCACTGAAATGTTCTGGTAGTTCTTGCTGTTTCTCCCGTCGTGCCGAGTGGACCACTGTAAACCATGTGATTAAATGATTATTGCACAGTTGGGATTCCTAGACCTGTTGAGATGGAGGTTTCAGCATAACCAAACAGATGACATCCAACATTAGACCACATAGGATTACCCCCTCCAAATCATTAAAACACCTACTTACTTATAAAATTTATTGACTACTTGCTGTGTGTCAAGTTCCATGCTAAGCTTGGGATTGAGGATATGGGATCAGGAAGAGGGAAAAGAGCACATCCAATTTAGGAGGTTAGGGAAGACTTCCTGGAGGAGACAGCATTTGAGATGGACCTTGAATAATAGGTAGGTCAGTGGCTCTCAAAGTGTGGTCTCTAGACCAGCAGTATCTATCATACCAAGAACTGCAAATTCCTGGGCTGCACTCCAGCCTTATCAGATCAGAAGCCCTGGTGGTAGGGAGCCCAGCGATCTGTTTTGTTAAGCCATCCAGATGATTCTGATGCACAATAAAGTTTGAGAACCACCAAGCTAGGATTTAGACAAGACGAGATGATAGCGAGGACATCAGTTTCAGAAGAAAGGATTCAACCCAGAACATATGCCAGACCATCTACTGTCACTTCCTGCTTATCTTCCTCCCTCTATTTATCCTGACCATGTTTTCTCTCCGCTTTTAGCTATTATTTATGCACACTGCTCCCTCGATAGTTCCTACTCAGTACATTCCTCTCAAATCCCTCATCCCATTACCCTCTCCAATCACTTTTACTTGGTTTTACTCCCACTTACTACCTATGTTTCAGACTCCTTAAATTTCTCCCAAAGTACCTCCCTCACCTTCTTTGTTTTCTAATCTGTTTATCCTTCTTAATTATCATTGGTATATCTGGAGTTCCCATTTACCACTCTGCGTTTGCACATGATTGCCTTGTCCACATTTTTGCTTTTTCTTTTCCTCCTAGTTTATTCCCAAATAATAATTCTGATGTCATTCTTAGTGGCCTCTTTGTAAATTTCTTCCCTATATTGCCCATATATGTTTTGATGGTGCCATTTATCTAATTTGTGCATTGTATGTGATTTTTCATTTTTATAACATATTTTTAATATTTACATGTTCTTTATTCCATGGGTTTCTTGCTTCTCAAACCTAGAATAGGACCTATTTGTATACTGTACATTTGTTACAG
Seq C2 exon
GTGATGAAACCAAGACTAACACTGAAGAGTTGTCCCAGAAGGAAGATAAATCCAAAGACATGGAATTCTTTGGGAAGATAAATGACAGACTTAACAAAGATATTCTTCAGTATCCTGAATCCAAAGATGCTTTTGAAAGTGAGGGCATTTTCAAGTGGCAACAGAGGAAAAGAAGATGCTATAAATGTGATGACTGTGGAAAAAGTTTCAGTCATAGCTCAGACCTTAGTAAACACAGGAGAACACACACTGGAGAAAAGCCCTATAAATGTGATGAATGTGGAAAATCTTTCATTCAACGCTCACATCTCATTGGACATCATAGAGTACACACTGGGGTGAAACCCTATAAATGTAAAGAATGTGGGAAAGATTTCAGTGGGCGCACAGGTCTCATTCAGCATCAGAGAATCCACACAGGTGAAAAACCCTACGAATGTGATGAGTGTGGGAGGCCCTTCCGTGTAAGTTCAGCCCTTATTAGACATCAAAGAATTCATACAGCAAATAAACTCTACTAATATGGTGTAAGTAACAAAAGTTCTTTAGCCACTCAGGCCAAATTAGTTATCAGAGAAATCTACCTTGGAGACCTTGAGTATCCTAAATGTAGGCAAAGCTTCAATCATCATTAAAAATTTCTCTGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031873:ENSBTAT00000009301:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF0013017=C1_1=WD(100=29.9),PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]