HsaEX1044874 @ hg38
Exon Skipping
Gene
ENSG00000160321 | ZNF208
Description
zinc finger protein 208 [Source:HGNC Symbol;Acc:HGNC:12999]
Coordinates
chr19:21987216-22010943:-
Coord C1 exon
chr19:22010792-22010943
Coord A exon
chr19:21988783-21988909
Coord C2 exon
chr19:21987216-21987311
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTGTTTTCCAGGGA
3' ss Score
11.47
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
CCTTTGTCTCTCGCTGCAGCCGGAGGTCAAGGTCTCGTCCTTACTGCTGTGTGTCCTCTGCTCCTAGAGTCCCAGCCTCTGTGGCCCTATGACCTGCAGGTATTGGGAGATCCACAACTAAGTCGCCAGGACCCCCTGGAAGCCTAGAAATG
Seq A exon
GGATCATTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGAAATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG
Seq C2 exon
GTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAGGAAGGAAAAGAGTCCTGGAATATGAAGAGACATGAGATGGTGGAAGAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160321_MULTIEX1-3/6=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCTCTCGCTGCAGCC
R:
TGGGGATTCTTCCACCATCTCA
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains