HsaEX1044905 @ hg38
Exon Skipping
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
Coordinates
chr19:44181858-44203279:+
Coord C1 exon
chr19:44181858-44181941
Coord A exon
chr19:44195747-44195899
Coord C2 exon
chr19:44196054-44203279
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTGATCGTTCCTCTTATCAGGTA
3' ss Score
9.63
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
ACCAATAATGAAACTCGGGTCTTCACAGACAATGGGAGGAGTCACCAAGTAGAAAATACGACCATGAGGAGATACATCGCCAAA
Seq A exon
GTATATGTGCATGAGAACCTTCTTTTCATCACCTTCCCTGGCTCCATTTGTCCTGCTACGGTGACACCAGTCTTTTAGTCCATACATTTGACTTCATGAGGAGTTTGCTATAATCAATTGAATGAAGAAGAAACATGTGGACCTGCTTTATAG
Seq C2 exon
AAGGAATGATGCCAGGGGGATGAATAGTTTTGCTGGATGGTCATGGACTTCAAAGAAGCATGATTGATAATTGGTTGACAAGGCAAATTGACAATGAGGTATGTGAGTGGACTACTTTTAATGAGCAGAATATAAAATTACTTGCGGCCTATTTAATTGTCAATAATCAGCAACCTCACCAGAAGATGAGCTTAATAATCAGGTGATCAAGATGGTACATTCTGTGAATATTCTTCAAGATTTTTCTCTAGTCAACCATGTCCATTCCCAGTGGGTGCATGAACAGTGTAGTCATGGTGGAAGAAATGGAGCTTATTAGTTCAGTACTATGAAATTCCATTTACTAAATCCAATCTGGCTACAACCACATTTATATGGCCAAGCTATCAAAAGTATGGACTAACACTGGACCTCAGATAGGCACTGTTCTTCAAAGGGGACTACCAACCTCCTGCTGGAATTTGATTACACCGGACCACTTTGATCATGGAGGAGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380_MULTIEX1-14/14=12-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAATGGGAGGAGTCACCA
R:
GCTCATCTTCTGGTGAGGTTGC
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains