HsaEX1044902 @ hg38
Exon Skipping
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
Coordinates
chr19:44170035-44195899:+
Coord C1 exon
chr19:44170035-44170095
Coord A exon
chr19:44177202-44177375
Coord C2 exon
chr19:44195747-44195899
Length
174 bp
Sequences
Splice sites
3' ss Seq
AAAACCATTCAAATGTGAAGAAT
3' ss Score
-1.51
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTCAGCTTCTTAGGACTCTGCACTTCCCCAGAAGGAAGAATTAAAAATGAATATGTTCAAG
Seq A exon
AATGTGGGAAGAGTTTCGGTCGGAGTGCACATCTTCAAGCCCATCAAAAAGTCCACACTGGAGATAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAAGTGGAGCTTGAACCTTGACATGCATCAGAGGGTGCACACAGGAGAAAAACCATATAAATGTGGGGAGTGTG
Seq C2 exon
GTATATGTGCATGAGAACCTTCTTTTCATCACCTTCCCTGGCTCCATTTGTCCTGCTACGGTGACACCAGTCTTTTAGTCCATACATTTGACTTCATGAGGAGTTTGCTATAATCAATTGAATGAAGAAGAAACATGTGGACCTGCTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380_MULTIEX1-11/14=6-14
Average complexity
C3*
Mappability confidence:
98%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTTCTTAGGACTCTGCAC
R:
AAAGCAGGTCCACATGTTTCT
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains