HsaINT0186501 @ hg38
Intron Retention
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:HGNC:13019]
Coordinates
chr19:44172860-44177687:+
Coord C1 exon
chr19:44172860-44172952
Coord A exon
chr19:44172953-44175497
Coord C2 exon
chr19:44175498-44177687
Length
2545 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
TGAATCCTTTGTCCTTACAGGAG
3' ss Score
10.26
Exon sequences
Seq C1 exon
GGCATCCACCCTTCAAACAAGATGTATCACCTATAGAAAGAAATGAGCAGCTTTGGATAATGACGACAGCAACCCGAAGACAGGGAAATTTAG
Seq A exon
GTAAAAACCAAACAGTTATGAGTTCTTATAGTTAACTGTCCATCTGCTTTGCTTCTTCTTAGCCTTGTTGCCATCACCTGGTCCAAATTGCCAACTGTCTTTCCTGGATTATTGCAACACCCTTTGTACTGCTTGCCCTGCTCCCACCCCTCTCCTCTTACATTCTGTTCTTTAAGTGGCAAAGTGAGTTTTTGTTACCTTGTGTCAGACTATGTTGTTCTTCTGCTCAAAATTCTCTGTGACTTATTTTACATAGAGTAAAATCCACTTAATGTGGCTGACAGAGTCTTACACGGTGTGCTTTTCATCCCCCACTACCTCTCTAAATATATCTTCTATACTCTCTTTCTGTGAATTCCAGCCACATTGTCCTCCCTCTTGCTTTTCAGACCTATCAAGGATGCTTCTGCCTCACAACCCTGTGTGTTCTTCCCTCTGCCTGAAATAATCTTTTACCTATAATCCTTCTGGTCCCTTCTTCATTCATTTCTTTGCTCAGTTTTAGTATTATAAGAAAGGCCTCGGCCGGGCACGGTGGCTTGCGCCTGTAATCCCAGCACTTCGCGAGGCTGAGGTGGGCAGATCAATCATGAGGTCAGGAGATCGAGACCAACCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATCAGCTGGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGAATGGTGTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTGTCTCAAGAAAAAAAAAAAGAAAGGCCTCCTCTGACCACCCTATTAAAAATACATTCTCTCCATTTACTCTCTGTGCACTGCCTTATATTGTGTGTAAGCACTGATTATCACCTCATATATGTTTTTGTTTAGTGACGTTTGTCTCCTCACTGGAGTGTAATCTCCAGGAGTGGAGGAATGTTATCTATTTGCTTCTGTCTCCTCAGTGCTTAGAATAGTCCTAGTATATGGCAGAGACACTATAAATATTAGTTGAATAAATGAGTTAATGGAAATCTGTCTTCCATGGAGGTAACTAATAGGTGGTGAACAAATCAGCATAAATAAGGGATATTGCAAAATATTTTTTGTCTTCTAATGAATTCCTAACCTAATTCTAATTTCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCATGTGTTTGCCTGTCTGTACAAGTTGACCCATATCTTGGGGAACCTATAGTGTCATAGTTGTAACCAAACTGAATAACATGCTTTGTTTATGACTTTCTTTGAGCATTTGTAGCAGAGCATATTCATTCGGGGAGGGAATATTTTACAATAAGGACTTTTATTTCTATTTCTTAGGTATTCCCCCATAGAAGGGAATAAAATTCGATTTCCTTATCCATTATATCAGGAAAGAAAAAGTAAAACTAAAAACCAGGACATGAGCATTAGCCTTTCCCTCAAAATGTTTGCACAGTTGCATCCCATTTGCTTCTTCCAAAGTCCACATTCATAAAAAGAAATGGATCTTACATTGTTGCCTCTCAAACATTTATATCGTGTAGGCTTATATGTATGTCTTTAGAAGGCCTTTTATGTAATGACACCATTACTGCTTGTGATTATTCTGATATGATACTTTATCTGTTTTTTTTTCCTAAATATCACAAGCTATTAAATTTATTTCACAATTGACTAGTAGACCACTTTGTCAATTTGGAAAACATTCTTGTTAAAGACAAACATATCTACATCCAGAAACTTTCTATACCTTGCTTTCAAAGAGACAGCATTCTTTGCTAGCCTTCCAATTTTGACTCAGTGCAAAAGCCTTAGAAGGATCCAGTGCATAGGTCTTCATGCTTTCCTTTCACCCCAAGTGATTATCAACTTTGATTTTTCTCTTCAGCAATAACTCACTTGGTGTACCCCTACCTCAGGTACAGCTTTTCAACTTTGCAGCAAAACTGTACTTTCTAGTTCTTTTTGTATTTCAGATACCTTACTTGTAAAAGCTCTTTTGCTCTATGACCTGGCTCAAACTTAAACTTGGATTTGAAGTTAGAAGAAATGTTGGAAGTCATTTATATATGAAGAAATGTTGGAAGGACTCATATATGCATACATTCCTTGAGTGACTATGAATGACTGCCGGGCAGTAACTTCTGGGCTGTGGTTGTAAACTGTGAGCACTACAAAATGTTTTTCCTTATTGATACCATATTATGGTAGGAAAGACATGGAATAAAAAATTTAGATAGTATGTCAGTAGTTGTGTTTTTAAATGGGTTTCATTAGTGCTTAGCAATTGGGAGCTTGGTGGACCATCTCTTGGTTTTGGACCATCTCTTGGTTTCTGTCAGTATGTAAACCAGAAACTTCAAATGTGTCACAAAAGATGAGCAGAACTATCCCGAGGTTCATTAAAGTCTTTTACTCTGTCCTCAGTGTGAAATCTTAAATCTTTGAACAAAAAAATTCACTATCTCTCTGAATCCTTTGTCCTTACAG
Seq C2 exon
GAGAGAAAAATCAAAGTAAGTTAATTACTGTTCAAGACAGAGAATCAGAAGAAGAGCTTTCTTGTTGGCAAATCTGGCAACAAATTGCAAATGACTTAACCAGGTGTCAAGACTCCATGATCAATAATTCTCAGTGTCACAAACAAGGTGATTTCCCTTACCAGGTAGGGACAGAACTGTCTATTCAAATTTCTGAAGATGAGAACTATATAGTAAATAAAGCAGATGGTCCCAATAATACTGGGAATCCAGAGTTTCCTATCTTGAGAACCCAGGATTCTTGGAGGAAAACATTCCTGACTGAGTCACAGAGATTGAACAGAGATCAGCAAATTTCCATAAAAAATAAATTATGTCAATGTAAGAAGGGTGTTGATCCCATCGGTTGGATTTCACATCATGATGGTCATAGAGTACACAAAAGTGAAAAATCTTATAGACCCAATGATTATGAAAAAGACAACATGAAGATTTTGACATTTGATCACAATAGCATGATTCACACAGGACAGAAATCGTACCAGTGTAATGAGTGTAAAAAACCCTTCAGTGATCTCTCCAGCTTTGATCTTCATCAGCAGTTACAATCAGGAGAGAAGTCTCTTACATGTGTTGAGCGTGGAAAAGGCTTCTGTTACAGCCCAGTTCTTCCTGTTCATCAGAAAGTACATGTGGGAGAAAAACTTAAGTGTGATGAGTGTGGTAAGGAATTCAGTCAGGGCGCTCATCTACAGACCCATCAGAAAGTCCACGTGATAGAGAAACCATACAAATGTAAGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTTAATGTTCATTGCAAGGTCCACACGGCAGAGAAACCTTATAATTGTGAGGAGTGTGGGAGGGCCTTCAGTCAGGCCTCTCATCTTCAGGACCATCAGAGACTCCACACTGGGGAGAAGCCATTCAAATGTGATGCATGTGGTAAGAGCTTCAGTCGGAATTCACATCTTCAATCCCATCAAAGAGTTCATACAGGAGAGAAACCATACAAATGTGAGGAGTGTGGTAAGGGCTTCATTTGTAGCTCAAATCTTTACATTCATCAGAGAGTCCACACAGGAGAAAAACCCTATAAATGTGAGGAATGTGGTAAAGGCTTTAGTCGGCCTTCAAGTCTTCAGGCCCATCAGGGAGTTCACACTGGAGAGAAGTCATACATATGTACTGTATGTGGGAAAGGCTTTACTCTGAGTTCAAATCTTCAAGCCCATCAGAGAGTCCACACTGGAGAGAAGCCATACAAATGCAATGAGTGTGGGAAGAGCTTCAGGAGGAATTCCCATTATCAAGTTCATCTAGTGGTCCACACAGGAGAGAAACCCTATAAATGTGAGATATGTGGGAAGGGCTTCAGTCAAAGTTCGTATCTTCAAATCCATCAGAAGGCCCACAGTATAGAGAAACCTTTTAAGTGTGAGGAGTGTGGGCAGGGTTTCAATCAGAGCTCACGACTTCAGATTCACCAGCTGATCCATACGGGTGAGAAACCATACAAATGTGAAGAGTGTGGCAAGGGATTTAGTCGTAGAGCAGATCTTAAAATTCACTGTAGGATCCACACAGGAGAGAAACCATATAATTGTGAGGAGTGTGGGAAGGTCTTCAGGCAGGCCTCAAATCTTTTGGCCCATCAGAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAATGTGGGAAGAGTTTCGGTCGGAGTGCACATCTTCAAGCCCATCAAAAAGTCCACACTGGAGATAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAAGTGGAGCTTGAACCTTGACATGCATCAGAGGGTGCACACAGGAGAAAAACCATATAAATGTGGGGAGTGTGGTAAGTACTTCAGTCAGGCCTCAAGTCTTCAACTTCATCAGAGTGTCCACACAGGAGAGAAACCATACAAATGTGATGTGTGTGGTAAAGTCTTCAGTCGGTCTTCACAACTACAGTCTCATCAGCGAGTTCACACTGGGGAGAAACCTTATAAATGTGAGATATGTGGTAAGAGCTTCAGTTGGCGATCAAATCTTACAGTTCATCACAGAATCCATGTTGGTGATAAATCCTATAAAAGTAATAGGGGTGGTAAGAACATCAGAGAATCCACACAGGAAAAAAAATCTATAAAATGATTCTTTGTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380:ENST00000454662:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains