HsaINT0186501 @ hg19
Intron Retention
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:13019]
Coordinates
chr19:44677013-44681838:+
Coord C1 exon
chr19:44677013-44677105
Coord A exon
chr19:44677106-44679650
Coord C2 exon
chr19:44679651-44681838
Length
2545 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
TGAATCCTTTGTCCTTACAGGAG
3' ss Score
10.26
Exon sequences
Seq C1 exon
GGCATCCACCCTTCAAACAAGATGTATCACCTATAGAAAGAAATGAGCAGCTTTGGATAATGACGACAGCAACCCGAAGACAGGGAAATTTAG
Seq A exon
GTAAAAACCAAACAGTTATGAGTTCTTATAGTTAACTGTCCATCTGCTTTGCTTCTTCTTAGCCTTGTTGCCATCACCTGGTCCAAATTGCCAACTGTCTTTCCTGGATTATTGCAACACCCTTTGTACTGCTTGCCCTGCTCCCACCCCTCTCCTCTTACATTCTGTTCTTTAAGTGGCAAAGTGAGTTTTTGTTACCTTGTGTCAGACTATGTTGTTCTTCTGCTCAAAATTCTCTGTGACTTATTTTACATAGAGTAAAATCCACTTAATGTGGCTGACAGAGTCTTACACGGTGTGCTTTTCATCCCCCACTACCTCTCTAAATATATCTTCTATACTCTCTTTCTGTGAATTCCAGCCACATTGTCCTCCCTCTTGCTTTTCAGACCTATCAAGGATGCTTCTGCCTCACAACCCTGTGTGTTCTTCCCTCTGCCTGAAATAATCTTTTACCTATAATCCTTCTGGTCCCTTCTTCATTCATTTCTTTGCTCAGTTTTAGTATTATAAGAAAGGCCTCGGCCGGGCACGGTGGCTTGCGCCTGTAATCCCAGCACTTCGCGAGGCTGAGGTGGGCAGATCAATCATGAGGTCAGGAGATCGAGACCAACCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATCAGCTGGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGAATGGTGTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGCGATAGAGCGAGACTGTCTCAAGAAAAAAAAAAAGAAAGGCCTCCTCTGACCACCCTATTAAAAATACATTCTCTCCATTTACTCTCTGTGCACTGCCTTATATTGTGTGTAAGCACTGATTATCACCTCATATATGTTTTTGTTTAGTGACGTTTGTCTCCTCACTGGAGTGTAATCTCCAGGAGTGGAGGAATGTTATCTATTTGCTTCTGTCTCCTCAGTGCTTAGAATAGTCCTAGTATATGGCAGAGACACTATAAATATTAGTTGAATAAATGAGTTAATGGAAATCTGTCTTCCATGGAGGTAACTAATAGGTGGTGAACAAATCAGCATAAATAAGGGATATTGCAAAATATTTTTTGTCTTCTAATGAATTCCTAACCTAATTCTAATTTCTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCATGTGTTTGCCTGTCTGTACAAGTTGACCCATATCTTGGGGAACCTATAGTGTCATAGTTGTAACCAAACTGAATAACATGCTTTGTTTATGACTTTCTTTGAGCATTTGTAGCAGAGCATATTCATTCGGGGAGGGAATATTTTACAATAAGGACTTTTATTTCTATTTCTTAGGTATTCCCCCATAGAAGGGAATAAAATTCGATTTCCTTATCCATTATATCAGGAAAGAAAAAGTAAAACTAAAAACCAGGACATGAGCATTAGCCTTTCCCTCAAAATGTTTGCACAGTTGCATCCCATTTGCTTCTTCCAAAGTCCACATTCATAAAAAGAAATGGATCTTACATTGTTGCCTCTCAAACATTTATATCGTGTAGGCTTATATGTATGTCTTTAGAAGGCCTTTTATGTAATGACACCATTACTGCTTGTGATTATTCTGATATGATACTTTATCTGTTTTTTTTTCCTAAATATCACAAGCTATTAAATTTATTTCACAATTGACTAGTAGACCACTTTGTCAATTTGGAAAACATTCTTGTTAAAGACAAACATATCTACATCCAGAAACTTTCTATACCTTGCTTTCAAAGAGACAGCATTCTTTGCTAGCCTTCCAATTTTGACTCAGTGCAAAAGCCTTAGAAGGATCCAGTGCATAGGTCTTCATGCTTTCCTTTCACCCCAAGTGATTATCAACTTTGATTTTTCTCTTCAGCAATAACTCACTTGGTGTACCCCTACCTCAGGTACAGCTTTTCAACTTTGCAGCAAAACTGTACTTTCTAGTTCTTTTTGTATTTCAGATACCTTACTTGTAAAAGCTCTTTTGCTCTATGACCTGGCTCAAACTTAAACTTGGATTTGAAGTTAGAAGAAATGTTGGAAGTCATTTATATATGAAGAAATGTTGGAAGGACTCATATATGCATACATTCCTTGAGTGACTATGAATGACTGCCGGGCAGTAACTTCTGGGCTGTGGTTGTAAACTGTGAGCACTACAAAATGTTTTTCCTTATTGATACCATATTATGGTAGGAAAGACATGGAATAAAAAATTTAGATAGTATGTCAGTAGTTGTGTTTTTAAATGGGTTTCATTAGTGCTTAGCAATTGGGAGCTTGGTGGACCATCTCTTGGTTTTGGACCATCTCTTGGTTTCTGTCAGTATGTAAACCAGAAACTTCAAATGTGTCACAAAAGATGAGCAGAACTATCCCGAGGTTCATTAAAGTCTTTTACTCTGTCCTCAGTGTGAAATCTTAAATCTTTGAACAAAAAAATTCACTATCTCTCTGAATCCTTTGTCCTTACAG
Seq C2 exon
GAGAGAAAAATCAAAGTAAGTTAATTACTGTTCAAGACAGAGAATCAGAAGAAGAGCTTTCTTGTTGGCAAATCTGGCAACAAATTGCAAATGACTTAACCAGGTGTCAAGACTCCATGATCAATAATTCTCAGTGTCACAAACAAGGTGATTTCCCTTACCAGGTAGGGACAGAACTGTCTATTCAAATTTCTGAAGATGAGAACTATATAGTAAATAAAGCAGATGGTCCCAATAATACTGGGAATCCAGAGTTTCCTATCTTGAGAACCCAGGATTCTTGGAGGAAAACATTCCTGACTGAGTCACAGAGATTGAACAGAGATCAGCAAATTTCCATAAAAAATAAATTATGTCAATGTAAGAAGGGTGTTGATCCCATCGGTTGGATTTCACATCATGATGGTCATAGAGTACACAAAAGTGAAAAATCTTATAGACCCAATGATTATGAAAAAGACAACATGAAGATTTTGACATTTGATCACAATAGCATGATTCACACAGGACAGAAATCGTACCAGTGTAATGAGTGTAAAAAACCCTTCAGTGATCTCTCCAGCTTTGATCTTCATCAGCAGTTACAATCAGGAGAGAAGTCTCTTACATGTGTTGAGCGTGGAAAAGGCTTCTGTTACAGCCCAGTTCTTCCTGTTCATCAGAAAGTACATGTGGGAGAAAAACTTAAGTGTGATGAGTGTGGTAAGGAATTCAGTCAGGGCGCTCATCTACAGACCCATCAGAAAGTCCACGTGATAGAGAAACCATACAAATGTAAGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTTAATGTTCATTGCAAGGTCCACACGGCAGAGAAACCTTATAATTGTGAGGAGTGTGGGAGGGCCTTCAGTCAGGCCTCTCATCTTCAGGACCATCAGAGACTCCACACTGGGGAGAAGCCATTCAAATGTGATGCATGTGGTAAGAGCTTCAGTCGGAATTCACATCTTCAATCCCATCAAAGAGTTCATACAGGAGAGAAACCATACAAATGTGAGGAGTGTGGTAAGGGCTTCATTTGTAGCTCAAATCTTTACATTCATCAGAGAGTCCACACAGGAGAAAAACCCTATAAATGTGAGGAATGTGGTAAAGGCTTTAGTCGGCCTTCAAGTCTTCAGGCCCATCAGGGAGTTCACACTGGAGAGAAGTCATACATATGTACTGTATGTGGGAAAGGCTTTACTCTGAGTTCAAATCTTCAAGCCCATCAGAGAGTCCACACTGGAGAGAAGCCATACAAATGCAATGAGTGTGGGAAGAGCTTCAGGAGGAATTCCCATTATCAAGTTCATCTAGTGGTCCACACAGGAGAGAAACCCTATAAATGTGAGATATGTGGGAAGGGCTTCAGTCAAAGTTCGTATCTTCAAATCCATCAGAAGGCCCACAGTATAGAGAAACCTTTTAAGTGTGAGGAGTGTGGGCAGGGTTTCAATCAGAGCTCACGACTTCAGATTCACCAGCTGATCCATACGGGTGAGAAACCATACAAATGTGAAGAGTGTGGCAAGGGATTTAGTCGTAGAGCAGATCTTAAAATTCACTGTAGGATCCACACAGGAGAGAAACCATATAATTGTGAGGAGTGTGGGAAGGTCTTCAGGCAGGCCTCAAATCTTTTGGCCCATCAGAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAATGTGGGAAGAGTTTCGGTCGGAGTGCACATCTTCAAGCCCATCAAAAAGTCCACACTGGAGATAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAAGTGGAGCTTGAACCTTGACATGCATCAGAGGGTGCACACAGGAGAAAAACCATATAAATGTGGGGAGTGTGGTAAGTACTTCAGTCAGGCCTCAAGTCTTCAACTTCATCAGAGTGTCCACACAGGAGAGAAACCATACAAATGTGATGTGTGTGGTAAAGTCTTCAGTCGGTCTTCACAACTACAGTCTCATCAGCGAGTTCACACTGGGGAGAAACCTTATAAATGTGAGATATGTGGTAAGAGCTTCAGTTGGCGATCAAATCTTACAGTTCATCACAGAATCCATGTTGGTGATAAATCCTATAAAAGTAATAGGGGTGGTAAGAACATCAGAGAATCCACACAGGAAAAAAAATCTATAAAATGATTCTTTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380-ZNF226:NM_001032373:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF079757=C1_4=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF127602=Zn_Tnp_IS1595=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF0184418=HNH=WD(100=5.1)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)