MmuINT0179571 @ mm9

Intron Retention

Gene

ENSMUSG00000050605 | Zfp61

Description

zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]

Coordinates

chr7:25076065-25078453:-

Coord C1 exon

chr7:25078364-25078453

Coord A exon

chr7:25077524-25078363

Coord C2 exon

chr7:25076065-25077523

Length

840 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAAA

5' ss Score

5.07

3' ss Seq

GTCCTTTCCTGTCTTCATAGGGA

3' ss Score

10.1

Exon sequences

Seq C1 exon

AGTATCAACTTTTCAAACGAGATAAACCATACCTGGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAGAGAGATTCAG

Seq A exon

GTGAAAAAATCTTCCATTACTCATCTCTAGCACTTGCTGTTCTCCGTCCCTGTTGCTGGCATTGTGTGGTCCAGATGGCATGTTTTGAGCAGTTGTAGCACTTTATTGCTGGAGTGTGTGCCAGGCATGGTTCTGGGTAGTGCCTAGAAAACTGAGCGCCATAAAATGTTTCTTCCTGTTGACACTGTCATATGGTAGGAGAGAGACATAATTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTTTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACCGCCTGGCTGAGAGACATAATTTTAAAAAGAAAATAAAATTCAACCATTAGTTGATTTTAAATGGGTTTTATTAGTTCTCTTTAAAAATTTTAAATTATTGTTTTATGTGTATGGGTGTTTGCCTGCATGTATTTATGTTTACCACATGTGGGCCTGGGGCCCATGGAGGCCAGAAGAGGGTGTCAGATCCCCTGGGAGTGGAGTTACAGTTGTGAGATGCTGTGAATGAACCAGGTCCTCTAGAAGTGCGGCCGGTGCTCTTGACTGCTGAGCCATTTCTCCAGCTCTTATTGGTTCTTAGTAGTAGGGCCCTCAGTAGGCTATATAGTGGGTTCTGTTAGCATTTACACCTGAAAACCTCATTAGTAACGAAAAGGATAGGCTGGAAAATCACATTGCTTTGCATTAAAGTCTAGTATGGTGAGCTAAGTGTGAAATCCCCAGGTATAAACATTTTCACTTGTCCTTTCCTGTCTTCATAG

Seq C2 exon

GGATTAACGGTCAGAGTGCGAGAGGAGCAGTCCGAGGGAGAGGGTCACCTGAAGCCCTTCCCTGCTGGCAAATCTGGCAGTGGGTCACGGACGACTTAACCACGAGTCAAAACTCTGTGGTAAATACTCCTCAGCTACAGGGCAAGGCTCCCTGCCAGTCCAGGCCAAGGCCATCTGCTCCCGTTTCTGTAGATGAGAACTATATAAAGAGTCATACAATAAGTGTTCCCATCCACTCCGGAAGGCCCCCACTTCCCACTTTGAGAGCCCAGGGAACTTCCCTGACTGAGCGGCAGACTCGGAAGGATCAGTACCACCAAGGCTCCCACAGAGATGAAGCGGGTCAGAGGAAACGGGATGCTCACCCTACAAGTTGGATTCCACGTCCCCGCTCTGATCACAGAGTATGCAAAAGTAAGGGGCGGTGTAGCCCCAGTGATCATGGGAGAGACGGGGTGGAAGTGGTGCCATTCGACCAGAATGGAGGGATTCACACTAGACAGAAAAGCTCCCAACACAGAGAAGCCGTTACCGATCTCTCCAGCTCGGATCCTCACCAAGTGTTAGACTCAGGAGGGAGGGCTTGTGCATGTGTTGAATGTGGGAGAGGCTCCCCTTGTGGCACAGATGGCTGCATTCATCAAGGAGGTCGCACAGGAGAAGAACGGAAGGAATTCGGTCACCAGAGGGTCTGCACGCCAGTGAAACCGTACACCTGTGAGCAGTGCGGAAAAGTCTTTACTTGTAGATCAGCACTTAATGTCCACGTGAAAGTGCACACGAGGGAGAGACCTTACAATTGTGAGACCTGCGGGAGTGCCTTCAGCCAGGCCTCCCACCTCCAGGACCACCAGAGGCTCCACACTGGGGAGAAGCCGTTCAAATGCGATGCCTGCGGCAAGAGTTTCAGTCGCAGTTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACAAGTGCGGGGAGTGTGGGAAGAGCTTCATTTGTAGCTCCAATCTCTACATCCATCAGCGAGTCCACACAGGAGAAAAGCCCTATAAATGCGTGGACTGCGGGAAAGAATTCAGTCGCCCTTCGAGTCTTCAGGCCCATCAGGGCATTCACACCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCTATACTCTGAATTCAAATCTCCAAGTCCACTTGAGAGTCCACACGGGGGAGAAGCCGTACAGTTGTGACGTGTGTGGGAAAGGCTTCAGTCGCTCTTCACAGCTACAGTCCCATCAGAGAGTCCACACGGGGGAGAAGCCTTACAAGTGTGATGTGTGTGGTAAGAGCTTTGGTTGGCGGTCAAATCTTATAATTCATCACAGAATCCACAGCAGTGGTAAACCTTACAAGAGCAAGAGAGATGATAAAAACATCAAGGAGTCCACTCAGGAAAAATGTTCTATAAAATAGTGCTTGAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000050605-Zfp61:NM_009561:6

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.613 A=NA C2=0.444

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000076954