RnoINT0168466 @ rn6
Intron Retention
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81122801-81124976:-
Coord C1 exon
chr1:81124908-81124976
Coord A exon
chr1:81124249-81124907
Coord C2 exon
chr1:81122801-81124248
Length
659 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTACCTCTGTCTCCATAGGAA
3' ss Score
12.32
Exon sequences
Seq C1 exon
AGTATCAACTTTTCAAACAAGAGAAACCACAGCTAGAAAGAGAAGAGAAGCCTAGGGAGCAAGGTTCAG
Seq A exon
GTGAGTCTTCCGTTATTCGTCCCTAGGACTTGCCATCCACGGTCCCTGTGGCCAGCACTGTGTGGGCCAAACAGCATGCTTTGAGCACTTGCAGCGTGTTATGCTGGACTGCGTGTCAGGCACCGTTCTGGGTAGCTGCGGGAAAGCTGAGCACCATAAAATGTTTCTTCCTGTGGACACCGTCCTGTGGTAGGAAAGATCCATAATTTCAAAAAGAAAAAAAAATCAATCAGTACTCGCTTTTAAGTGGCTTCATTGGTTCTGTCTTTAAATTTTTTCATAATTATTTTATGTGTATGGTGACTGCCTGCGTGTGTTTATGTGCACCACATGTGTGCCTGGGGGTCCACGGAGGCCAGAAGAGGGCGTCGGATTCCCCGGGAGTGGAGTTACAGCTGTGAGATGCTGTGAATGAACCCAGGTCCTCTAGAAGGGCGGCCAGTGCTCTTGACTGCTGAGCCATTTATCCAACCCTTATTGGTTCCTAACAGTCGGGACCTCAGTGGACTTTACAGTGGTTTCCGTTAGCAGTTACACCCGAAAGTTTCATCAATAGTGAAAAGGAATCATCTTGATTTGCATTCAAATCTGGTATTGTGAGCTAAGTGTGAAATCCAAGTGTAAACGCTTTTCACTTGTTCTTACCTCTGTCTCCATAG
Seq C2 exon
GAATGAACAACCAGAGTGAGAGAGGAGCTGTCCAAGGTGGAAGGTCACCGGAAGCCCTTTCCTGCTGGCAAATCTGGCAGTGGGTCACGGACGACTTAACCACATGTCGGGACTCTGTGGTAAATGCTCCTCAGTTACAGGACGATTCTCCCTGCTGGGTCAGGCTAAGGTCATCTCCTGACGTTTCTGAAGATGAGAACTATATAAAGAGTCATAAAGTAAACGTTCCCATCCATACGGGAAGGCTCCCGCTTTCCCAGAAAACTTTACTGACTGAGCCGCAGACTCGTAAGGAGCGATACCAGCAAGTCTCCAAGAGAGATGACCAGGGTCAGAGTAAACCGGATATACACTCTACAAGTAGGAGTTCACATCCCCACCCCGATCGTAGAGGACACAAGAGTAAACAGTCGTATAGCCCCGGCGATCGCGGGAGAGACAGTACAGAGGTGGCGCCATTTGACCAGAATGGAGTGAGTCACACTAGACAGAAAAGCTCCCCATACAAAGAAGCTGTTTCCGATCTCTGCAGCTCTGCTCCTCACCAAGTGTTGGACTCGGGAGAGAGGTCTCGTGCGTGTGCTGAATGTGGGAGAGGCTTCCCCTGTGGCACAGACGGCTGCGCTCATGAAGATCGCACAGGAGAAAAGCGTAAGGAGTCCGGTCATAATCTCCCCATCCACCAGGGGGACCAGACAGTAGCGAAACCACACACATGTGGGCAGTGCTGGAAAACCTTCAATTGCAGGTCCGCCCTTAACATCCATCTGAAGGTGCACACCAGGGAGAGACCTTACAACTGTGAGGCATGCGGGAGTGCCTTCAGTCAGGCCTCCCACCTCCAGGACCACCAGAGACTCCACACCGGGGAGAAACCGTTCAAGTGTGATGCCTGCGGCAAGAGTTTCAGTCGCAACTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACAAGTGCCAGGAGTGTGGGAAAAGCTTCATTTGTAGCTCAAATCTCTACATTCATCAGAGAGTCCACACGGGAGAGAAACCCTATAAATGCGTGGACTGCGGGAAAGAATTTAGTCGCCCTTCGAGTCTTCAGGCCCATCAGGGCATACACACCGGAGAGAAATCGTACGTGTGTACTGTGTGTGGTAAGGGCTACACTCTGAACTCGAACCTCCAGGTCCATTTGCGAGTCCACACTGGAGAGAAGCCGTACAGTTGCGATGCGTGCGGGAAAGGCTTCAGTCGCTCGTCACAGCTGCAGTCCCACCAGAGAGTCCACACGGGGGAGAAGCCCTACAAGTGTGAAGTTTGTGGTAAGAGCTTCGGTTGGCGGTCAAATCTTATAATTCACCACAGAATCCACAGCAGCGGTAAACCTTACAAGAGCAAGAGAGACAGTAAAAGCACTGGGGAACCCGTTCAGGAAAAATGTTCTATAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416:ENSRNOT00000026252:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.653 A=NA C2=0.419
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCCTAGGGAGCAAGG
R:
TTGGAGACTTGCTGGTATCGC
Band lengths:
342-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]