BtaINT0165067 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52480768-52486071:+
Coord C1 exon
chr18:52480768-52480894
Coord A exon
chr18:52480895-52484629
Coord C2 exon
chr18:52484630-52486071
Length
3735 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TCAATTCTCTGTTATTATAGAAG
3' ss Score
4.5
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACAGAGGAGGAGCTGGGGTTACTGGACTCAGCCCAGAGAAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTAG
Seq A exon
GTGAGGATAGCCTTTCTCTGCAAGTGTCTTGTGACCTTGGTGTTTCAAGGCTCTGGGGTTCTTGAAATGGTTCCCTGAGTTTGAAGACCAGACTTTTCCAGTTCCAGTGGGATATGAGAGGCTATCTCTGGTCTTTCTAAACAGTATGTTTCAGGTCTTTTTCTTTTTTTGGTCAAAGAACAGTCAGTGAACAGTATCCTGATGTACTTTGTCTGTTCTTTTTCAGATTTCACTCATGTCCCATTAGTGGCAGTCCCATTAGTGGATTATAAAGCCAACTTATCAAGCCTAATATGCTGTTTTTAATGAAATCAAATATTACAGAGAAAATATCAAGAGCTTCTTAGGAAGAATAGATCACGTTGCAGTGAAAACCCTGGTCAATGCATGAGTGGTGTGAGAGCCAGTGGGAACAGATTTTAGGAAAATAGACCGGTCAGAAATAGGTCATTCAGCCTTCATTTTAGTAATGCATATTCCTACATATGTGTCTGAGTCATGAAATAAATGCTACTTCTTCAGTGGGTCATGATACAAAGTTTGAAAAACAGGGCCTTCAGTATCTTTTCTTGAAACATAAATTACTTGTTTATTATTGTTATAATCAAGGCAAAATCTCTTAAAACAATTAGCCTTGATAATGGAAATATAATCAGAACCATTTTACAGTTTATTCTTCTCTGCTGTTCATACTTCACTCTTCAGTATCTTAAATATGCAGTTGGAAACTCAAATTTCCAGTAAATTGTAGCTCTGACCTGTTCATTTTAACTTGCAACTCTGCATGTTCTCATTCTTCAAAAGAGATACAAAACACATAGAAAGAGAAGAGAGGCTTTGGATGATGAATTCAGCGACCCAGATAGAAATTTAGGTAAGCACCAAGCAGTTGTTCATTCTCGTGGTTAACTCTCCATATGTTGTGCTTCTCACCAGCCCTGTGCTGCCCATCACCTGGTCCCAATGGGACATCTGTTTCCCTGGTTATTACACAGCCTATACTGATCACCTGCTCCCAGCTTTCCCCTCCTACAGTTTGTTCTTGAAGTGGCGAAGGGATCCTTTGTAACTTTAAGTCAGATTATGTTAGTTGTCTGTTCAAAATTCTCTTATGGCTTGTTTTACTTAGAATAAAAACCACCTAAAGCAACTTCTGGAATCCTCTAATGGTCTGCTTTCGACCCCACCACCTCCTTGAGTACATCTCCCCTCCTCCTTCTGACTCTGTCCTTTCCATCTCCATCATCCTCCCTACTGTCTCAGACCTGCAAAGGATGCATCTCCTTGTCCTCTCTGCCTGGAATACTCTTTCACCTGTAATCCTTCAGGCCTATGTACTTACCTCAGGTCACTCACCTTCAAGAGGAAGAGAGGGCTGTCCTTGGACCACCCTATAGAAAATCCAGTCCTCTCTTTCTTTCTCTGCCCTGCCTTGTTTGATCTTTGAGCACTGATCGTCACTCATGTCCATACATTTTGGTTCACCTGTTTCTCACTTCTCTCTCTTCCCCTGGAGGGTATTCCAGGAATGGAGGAATTTGTCACTGTTGTTTTTTAATATTCTTTATTTGGCTGTGCCAGTCTTAGTTGAGGCATGCTGGATTTTCAATCTTCACTGCCTATGTGAGATTTAGTTCCCTGACTAGAGATCAAACCCAGGCCACCTGCATTGGGAGTGTGGAGTCTTAGCCACTGGACCACTAGGGAAGTCCCCAGAGTGGAGGAATTTGGTCTGTTCCATTTATTGCTTACAAGCCTAAGTGCTTAGAATAGCCTTGGTACATGACAACGACTCTAAATATTTGTTGAATAAATGGATGAGTTGATGGATAGAGAAATTTGCCTACCACTTAAATAGCCAGTGGCTGGTGAACAAATCCAAGTGAATAGGGATATTGCAAAATGTTTTTGTGTCTTCAAATGAATTCCTAGCCTAATTCTCAGAGAAAGAAATGGCAACCCACTCCAGTACTCTTGCCTAGAAACTCCCATGGACAGAGGAGCCTGGTAGGCTGTAGTCTCTGGGGTCGCTAAGGGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTAATTCTAACTTCTCAGGTCCCATGGTGTATATGTGGGTGTTTGCCTTTCCGTACAAGTTGACCCTCATCAACTTGAGCAGACACATGCATAGAACCTGTAATTATAACCAAAATGAGTGAAATGCTTTCCCTGTGACTTTCTTTTAGCCGTTACTAGCAAGCATATTCATTTGGGGAGAAAAATTTTTTTTGAATGAAGAATTCTTATGTCTACTTCTTAGGTAGCTTTTCATAGAAGGAAAAAAAAATTCTATTTCCTTATCCATCATATCCGGGGAGAAAAGGTCTCAGAAAATAGCTAACTGGTGAGTTAGTCTTGCCCTGAAAAGATTTTCCCAGCTCTGTCCCATCTCCTTCCTCCCAAGCCCACCTCAGTAACAAGAAATGGATCTTAGGTTGTTACCTCTACAAACATTTTGTTTGTGTGGCGGTTTGTACATATCCTTTAGAAGGGACTTCAGATCATATTTGCCTTGACTGCTTTGATGATTCTTTGACAGTATTCTTTCTAAATACTTATCATAAGCTATGGAATTTATTCCCACCTCACTCATGAACTGCCTTCTTCACTTTGGAAATCATTCTTGTTAAAGGCCAATGTATTTATGTCCAAAATTTTTCCATGCTGTGGTTATTTTTTTAAAAAAAATAAGCAGCCAGTTTGTTTTCTTAATATTTATTTATGTATTTGGCTGTGCCAGGTCTTAGTTGTGGCATGTGGCATCTCTAAGTTGCAACAGGTAACTCTTAGTTACAGCATGTGAGATCTAGTTCCCAAACAGGGATCAAACCTGGAACCCTTGCATTGGGAACTGCACCACCGGTTTTAGCGACTGGACCACCAGGGAAGTCCTTTCCATGCTGAGACATCATTCTTCCCTAGCCTGTAAATGTTGATTCCTACTTTATGGGGATGTGGAGCCACATTAGGCTATACAGCTACCTCAGAAGGATCCAGTGTATAGGTTTCAGATTATGATACTGACGTGCTGCCTACCGCACTAAGAAACAGAAAGAGTATTGTATAGGTTTGTGCTTTTTATCACCCCCACTGATTCTTAGCACCTTGAATCTTCTCAGCACTCCCTCCTTGGTGTACTGCTGCCTCTGGTGCAGCATTTCAGCTTTTCAGCACGCTGTACTTTCCAGTGCTTTTCCTCTTTCAGACACCTTCCTTGTGAAAGCTCTTTTGCTTCTCTGACTTGATTCAGAGATAATCTGGAATTCAAAATTGTTGAGCATCCTGGAAATCAAACCGGGGTTCACCTGTACATGCCTTTCTTGAGCCCTGACTAACTTAACTGCCAAACATTGTGAAACCTGTGAGCACAGCAAAATGCTTGTCTGTCTTGATACTGTACTGTGATAGGAGCAATATGTAATTTTTGAAAGATGCTGTAAATAGTATGTCAGATAGCATTTTGTTTTACATGGTTTTCATTACTGCTAAGTATTTGGGAGTTTAATGGACCATCTCTTGGTTGCTGTCAGTATATAAACCTGAGAACTTTATTTGTGGGGAGAAAGATAAGTCAAACCATGCTGGGATTCATTAAAGTCTCGTACTGTGTCTTAAGTGTGAACTCTTGACTCTTTGAACAAAGCTTTCACCTGTCCACATCTCTCAATTCTCTGTTATTATAG
Seq C2 exon
AAGAAAACAATCAGAGTGAGTTGAGTGCCATTCAAGAGAGAGGATTACATGAAGAGCTTTCCTGCTGGCAAATCTGGCAACAAATTGCTAACGACTTAACCAGATGTCAAGACTCCATGATAAATAATTGTCAGCTCCACAAACAAGGTTATTCCCTGCACCAGGTTGGGTCAGGACTATCTATTCAAATTTCTGAAGATGAGAACTATATATTAAATGAGAAAGCAGGTGGTCCTGGTGATACTGGAAATCCAAGGTTTGCATCTTTGAGAGCCCGGGATTCTTGGAGAAAAAGTTCCTTGACTGAGTCACAGAATTACCAGAATAGATACCAGGAAATTTCCACGCAAAGTAAACTGTGTCGGTGTAAAGCGGATGTTGACAGCATTGGTCGGATCTCATACCACCTTGATGATCGAGGAGTACACAAGAATGAAAAGTCTTATTGCCACAATGATTATAGAAAAGACAGCACGGTTTCCACATTGGATCAGAATAGTATGATTCACACAGGACAAAAACCTTACCAGTGTAATGAATGTAAAAGAACCTTTACCAGCCTTTCTACCTTTGATCTTCACCAGCAGTTACACTCAAAAGAGACCTCTCACGTGTGCGATGAGTGTGGAAAAGGCTTCCGTTATAGCTCAGTTCTTCATATTCATCAGAGAGTTCACATAGGAGAAGAATGCAGTGTGTTTGCTGAGTGTGGAAAGGAATTCCATCAGAGCTCACAACTACAAACTCATCAGAAAGTCCACAGCATAAAGAAACCATTCACATGTGAGGAATGTGGGAAAGGCTTCAGTCGTCGATCAGCACTTAGCATTCATTGTAAAGTCCACACGGGAGAGAAACCTTACACTTGTGAGGAGTGTGGCAGGGCCTTCAGTCAGGCCTCCCACCTTCAAGACCATCAGAGAGTCCACACCGGGGAGAAACCATTCATATGTGATGCATGTGGTAAGAGCTTCAGTCGGAATTCACACCTTCAGTCCCACCAGAGAGTCCATACAGGAGAGAAACCGTACAAATGTGAGGAGTGTGGGAAGGGCTTCATTTGTAGCTCAAATCTATACATTCACCAGAGAGTCCACACAGGAGAAAAACCCTACAAATGTGAGGAATGCGGGAAAGGCTTTAGTCGGCCTTCAAGTCTTCAGGCCCATCAGGGAATCCACACTGGAGAGAAGTCATATGTATGTAATGTGTGTGGTAAAGGCTTTACTCTGAGTTCAAACCTTCAGGCACATCAAAGAGTCCACACAGGGGAGAAACCATACAAATGTGAGGAGTGTGGGAAGAACTTCAGGAGGAACTCCCATTATCAAGTTCATCTGGTTGTCCACACAGGAGAAAAACCCTATAAATGTGAAGTGTGTGGGAAGGGCTTCAGTCAGAGTTCATATCTTCAAATCCATCAAAAGGCCCACAGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431:ENSBTAT00000037250:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.112
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development