MmuINT0178568 @ mm9
Intron Retention
Gene
ENSMUSG00000074283 | Zfp109
Description
zinc finger protein 109 [Source:MGI Symbol;Acc:MGI:1929099]
Coordinates
chr7:25012814-25019496:-
Coord C1 exon
chr7:25019370-25019496
Coord A exon
chr7:25014860-25019369
Coord C2 exon
chr7:25012814-25014859
Length
4510 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTGTCCTCTATTCTTTCAGGAG
3' ss Score
10.92
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGAACCTCCTGGCAGTGG
Seq A exon
GTGAGGACGGGGCCTTGTGTCCTTGGTGATGTCAGAGTTCACACCCGTGTGTCTGTTGCACGCCACTGCTTCCCTTTTAGGTTACTTATTTTGTATTTTATGTACACGTGAGTGTTTTGTCTGCGTGTGTGTCTGTGCCACATTCACTCATGATGCCCACAGAGGCCAGAAGAGGGCATTAGATCCCCTGGACCTGGACTTACAGATGGTTGTGAGCCACCATGTGCATGCAGCAAACCTACTCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTGAATTGCGGAACCATCTCTCCAGCTTCCACTTTATTGTTTTTTAATTTATTTATTTTTATTCTTTAATTCTTTTTTATAGTCAAGACGTCATACCCCTCCTGGTCTGCCCCTGACCACTCCACATCCCATACCTTCCCCGACCTCTGTCTCCAAGAGGATGTCCCCACCTCACCAGGTCTCTCCACTTTCTGGGGCTTCAATCTCTCGAAGGTTAGGTGCAACTTCTTTCACTGAGGCCAGACCAGGCAGTCCTCTGCTTATATGTGTCAGGGGCCTCGTATCAGCTGCTGTATGCTGCCTGGTTAGTGACTCAGTGTATGAGCGATCTTGGGGGTCCAGGTCAGTTAAGACTGCTGGTCTTCCCATGGGTGCTTTAAATTAAAAATTTGAAACATTTCTTTGTGAGTGTGAGTGGAGTGTGTTTGTGTGTGCATGTGTGCGTGTGTGTATGTGTATGTGTATGCTAATCAATGCCATGACCATAGGAACTCCGGAAAAGAAGCAGTTAATTGGGGTTTGTTTACTGTTTCTGTGGTGTAGTCCACTGTCATCGTGGTAGGGAGCAGAGCGGCATCCAGGCCAACATGGTAGCAGAAAGTTGTCCATTCAGATCTTCAGGCAGCAGGATGAGAGAGACAGTCAGCCTGGGTTGAGTATTTGAATCTCCAGAGCCCACCCACTCTGACACATTTCCTCCTCCTCCTGATCCCTGCCAAGCTTCTCCAATCCCTGTGGACCAAACATTCAAACACATGAGTGTATGCAGGCCATACCTATCCACACCACCACATTCCGCTCCCTGGCCCCCATAGGCTTGTAGCCATAGCAGAATGCAAAATGTGTTCAGTCCAACCACAAAAGTCCCCAGAGTCTATCACAGTCTCAACCCTGTTTAAAAGTCCAGAGTTTAAAGTGTCTTCTGGACTCATGGAATCTCTTAACTGTAACCTTCTGTACAATCAAAACTAAGATCAAAAAGCAGATTGCAGAATCCATCATACAGGGAGGAAAGGCAGCCCGGCGAGCAAAGACTGAACCTAAGCAAGAACAGAAACCAGGAGAGCAAACCCCAAACTCTGCATCCCTGTGATGTCACAGCGCCCTGCAGCTCCCCAACTCCTTCCAGCTCTGTTGACTGCAACACACTTCTTTCCCTTGGGCTGGTTCCCCTCCCTGTTAGCGGCTTTCCTTGGAGGTATTCCATTCCTCTGGCATCTCTGACCTCTTGGGGTCTCCAAGGCAATCCAGGCTACACCTTCACAGCTTCACACAATGGCCTCTCGGGGCCTCCATGCAGGGACACCCCTGCCACATGCCTGGCCTCTGTGCCTTTCCTTAGCTGCAGGGAGGTTCCACAAGCTCTTTCATGTGTCCTTGATCCAGATAGTTAAGTGCAGCCTCCAGTCGTCCCAACGCTTTTTGTACTCTTGTACAGGGGCTTCCTGCCTGCCTTAGTCAGAGTCCATTGTACCCCTCCCTGCCTCCGACTGCTGACTTTCTATTTCACTCAGTACAATGAAGTTGTTTTCAGTTTTTTGTTTTCTGGCAAGGCCTTGCTATGTAGCCCAGGCTTGCCCAAAATTTGTGATTCCCCTGCCTCAGCTTTCCAAGAATTAGGGTGACAGGCTTCATCCCCTGTGCCTGACTGGAGCCTCCCCTTCCTAGGGCCTCACACTCCAGCTCTGCCTATCTCCATTTTTTTTTCTGTTTCTGTTTTTGTGTCTCAGCTGCTGACCTTATTTCTGCTCAGAGTTCTCCCTGGTGGAGTGATAAGGCCCCCACCCCCGTCTGCATTTGTCTCCTCAGGAGTCTTCACAGGCCCCGCTCTGAGAGGCAGCTTTATACGTGTCTTCTGCTCACTCTCTTCATTCTGCTTTGGCCTCTGTTGACCAGACCTTTATCTATTTGCACAGCTACACGTGGGCACTCATCAGAGGCCTAAGGCGACCTTGAACCCTTGCTCCTGGGCTTACCCCAGATTTCCCACCATGGTCAATGGTGGCTTGCTCCTGAGCGGGCTCTAGCTTTGTTGTAGACCTTTGGTCCTCAGAACTCTTAGATGTTCACCTTCGATGCTGGTCTCTAGAAAAATGTTTCCAGAGAGGAATCTGGACTCAGACATTCAATGTGGATATCCTTGCTGATAACTTCTTTTTTCAGTTAAGGTTTCATTGTTCCAAAGAGACACCATGACCACAACAACTATTATAAAGGAAAACATTTAGTTGGGGCTGGCTTTCAGTTTCAGAGGTTCAGTCCAATGGCATCATGACAGGGAACATGGCAGGTTGCAAGAAGATGTGGTGCTGGAGGAGTTGGGCATCCTACATTTTGATCCAAAGGCATCCAGAAGGTCTCGAGACTGTCCTTGACAGGCAGCCAGGAAAAGGGTCTCTTCACTGGGCAGAGCTTGAGCACTAGGAGCTGTCAAAGCCCGCCTACACAGTGACAGTCTTCCAACAAGGCCCCACCCCCTAATAATGTCACTCCCCAAGGGCCAAGCATATTCAAACTGTCACATTCCACTCCCAGGCACCCATAGGCTTTTTCAAACACATGACTCTATTGGGGGCCCTACCTAGCCGTAGCATAATGCAAAATACATTTAGTCCCATCTTTAAAAGTCCCCATATTAATCACAGCCTCAACAATGAGTCCAGAGTTCAAAGTCTTTTCTGAGATTCATGCAGTCACTTAATGGCAATCCCCTATAAAATAAAAATAAAAAAAAGCAGATCACAGTCTTCCAACATATCATGGTGTGGTCCGAGAGGTGGTCTGAGGCATTTAGCAGGGTCTAGAGGTGACTGAGCCACTAACGTTTAGGGCAGGTGAGAGGAATGGAAATGAGAATATTGTTGAGGGTACGCGTTTCCAGGTGGGAGATAGTAGCACCCAGTAATTGTGTCAGAAGGCAAGTTGAAAACGAACAACCTGTGTGTGTGGCTTCTATCTGTGAATTCAAGGGAAGCTGGGTGGGGCCTGGTAGTATGGCCCATTCCTGGAGCTTAGATGGGGTAGCAAAAGCTACACACAACAAACCATAATGCCTGGACCTAAACTTGTCATGGCCGTTATGGCTCAAGATTCAGATCATAAGCCTGTATCTTTTAGCCTAAAGATCTGGATCATATATGTGGCCTCTATTTCAGGATCGTGGTTCCCGTAAAATTTTATTCCAGATAAAAGTGCCAATGAAAACAACAACCAGGTAATAATAACGCCTAACAAGACCTAACCATCCCTTGTTCAACTGCAAACATATAAACAACAAACTTAGCTGGGTGGGATCTTGCCCAGAGGTCGCCATTTCATTAATTCCATTTAATACCCTGAACCCAGGACTTAGCGCCATTACACTTCCTGGTGGCCCCTTCCTCTTTAAACTACATACCCATTTTGTAATTTTTCCTTCTAAGCTTTTGACCCTTGATCAGAATGCTCTTCATAAGAATGAACAACAGGGTGTATACTAGGCTTTCTGAGGCCTCCTTCTTCAATAAAACCAATCTGAATTTCTTCATTTTAGCCTTAGGCAGACTCCCCAGAAAAGGGCACAAAGCAGCCACACACTTCACCAAAATATCACAATAAAATGTTTCTAGTCCACATACTCCTCGGAAGCCTCTTGAGACAGGCCCCCCAGAGTTCAGATCATACTTATCCCCAATGTCTTTCATAGTCCTATTAGGATAGCCCAGGAAGCCCGACTTAAAGCATCCCATGGCTTTCCAAATCCAATGTCCCAAAATCCACGTTCCTCAAAACAAAAACATGGTCAAACCTATCACAGCAATACCTAACTCCTGGTACCAACTTTTGTCTTCGTTACGGTTTCATTGCTGTGAAGAGACACCATGACCACAGCTACTCTTATAAAGGAAAACATTTAGTTGGGGCTGGCTTACAGTTTTGGAGGTTCAGTCCAATGCCATCATGATGGGAAACATGGCAGCTTGCAGGCAGATATAGTCCTCAAGGAGCTGGGAGTTCTACATTTTGATCCAAAGGCATCCAGAAGGAGACCATCCTTGGCAGGCAGCCAGGAGGAGGTCTCTCTCTCTCTCTCACTGGGCAGAGCTTGAGCTCTAGGAGTCCTCAAAGCCTGCCTACACAGTGACACACTTTCTCCAGCAATGCCACACCTTTCCAACAAGGCCATACCTCCTCATAGTGCCACTTCCCATGGGCCAAGCATATTCAAACATTATGCCTTCTGTCCTCTATTCTTTCAG
Seq C2 exon
GAGGCCAAGTTCCAAACAAGATGGAGAACCTTCATACAACAGGAGTAAGATGCCTTTCACTGGGGCAACTTCCATGTGGGCACATGGCAAGCCATGATGCCAACAAGCTGGCCAGAGCTCCAGAAGGGGTAATCAACACTCAAGGAATGGTATCCTACTTCCCAGAGCAATGCCATTTCTCCTGCCACAGGGGACCAGAGGAGCCTCCCTGGGCCTCCAAGGACAATGGCTGTCTTGAGATTCTCACAAATGATCATTCTAGCATTACTGAAAGTCAGAAATTTCTGTCTGGGATTGCTCAGTGTTCTTGGAGTAAAAAACATCTTAGCAAGAGACAGAACTATCAGAAACACTGTGTGCAGACTCCAGTGAAAACCAAGCCACGACGGCTCTTGGCTCCAGGTATTGACAGAATGAGTTGTGTTTCCCATCAAGATAACAATACACTGCATAAAGGAGACAAAGGCCAGAGCAACAGTGACTTTGATAAACTTACCTTTCCTGTGTCACCTGTCACCCCGCATCATGTTTACACAGAAAGAAAGTCCTACAAATGCAGCAAGGCCCAAGAGGCCTTCATTGACAGACCTACTCTAGAACTCCATCAGCAGGACCTTGTAGGAAAAAAGTCCCCTGTACGTAGTACATACGAAGTCTCCAGACATAGCTCCATTCAAAAGAGTGTTCATGCAGGAACAAAGCGCTACTGGTGTCACGAGTGTGGCAAGGCCTTCAGTCAGAGCTCAGCACTTCAGACTCACCGGAGAGTGCACACAGGGGAGAAGCCCTACAGGTGCGACAGCTGTGGGAAGGCCTTCACACAGTGGTCAGTCCTCCATGCCCACCAGAGAATTCACACAGGAGAGAAGCCATATAAGTGTGGAGACTGTGGCAGACGCTTCAGGTTTAGCTCAAACCTGCACATCCACCAGCGAGTCCACACTGGGGAGAAACCGTACAAATGCCACGTGTGTGGGAAGTGTTTCAGATTCAGATTTTACAGCCATCAGCGGGTCCACACAGGAGAGAAGCCATATAAGTGTGACGAGTGCGGGAAGGGTTTCACTTCAGCCTCAAACGTCAAAGTCCACCAGCGGGTCCACACGGGAGTGAAGCCGTTTTGCTGCAATGTCTGTGGGAAATGCTTCAGTCGGAGCTTTCATCTTCACACTCACCAGAGAGTGCACACGGGGGAGAAGCTCTACAAATGTGACGCGTGTGGGAAAGCCTTCAGCCAGAGATCCAGTCTCCAAGTCCATCGGCTAATTCACACAGGAGAGAAGCCATATAAGTGTGAAGAGTGTGGGAAGGGTTTCACTTCAGCCTCAAGCTTCCAAGGACACCAGCGGGTCCATACAGGAGAGAAACCATTTCATTGCGATGTGTGTGGGAAAGACTTTAGCCGGAGCTCATATCTTCAGATTCACCAGAGAATGCACACGGGAGAGAAGCCCTACAAATGCGACAGCTGTGGGAAAGCCTTCAGCCAGAGGGCCCATCTCCAAGTCCACCAGAGAACTCACACCGGGGAGAAGCCGTTCAAGTGTGAGGAGTGTGGGAAGGAATTCAGGCAGCGTTCGGGGCTGAGTTCTCACCAGATAGTCCACAAGGAAGAGAAACCCTACACGTGTTGGGAGTGTGGGAAGGGTTTCAGTCAGCCCTCACTCTTCGAAAGACACCGGCGGGTCCACACTGGGGAAAGGCCCTACATCTGCGGCACCTGCTGCAAAGGCTTCAGCCAGAGATCGCATCTCGTCAAACACCAGAGGGTCCACAGTGCAGCGAATCTCTAGGTTTGTTCTGCTGTCGGGTGGGCTCCATGCTGCTGCTTGTTAAAAGCCTCCCTTAAACCCAGAAGCGTTAGCAGATTTCACTGGGGATTATATTTTGGTTATTTTCCCATGAAGTCTTTATCTTACTGTACCTCATTTCATTATGCAAAGGGAAGACCGTATTTTAGAATGGATCTTAGAATACAAAGTAAACAAATTCAAAACTTATATAGAGAAGATCGGATTTCTAATTTTCTATCTAATTTAATATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074283-Zfp109:NM_020262:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: