MmuINT0179571 @ mm10
Intron Retention
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24291039-24293434:-
Coord C1 exon
chr7:24293345-24293434
Coord A exon
chr7:24292505-24293344
Coord C2 exon
chr7:24291039-24292504
Length
840 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
GTCCTTTCCTGTCTTCATAGGGA
3' ss Score
10.1
Exon sequences
Seq C1 exon
AGTATCAACTTTTCAAACGAGATAAACCATACCTGGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAGAGAGATTCAG
Seq A exon
GTGAAAAAATCTTCCATTACTCATCTCTAGCACTTGCTGTTCTCCGTCCCTGTTGCTGGCATTGTGTGGTCCAGATGGCATGTTTTGAGCAGTTGTAGCACTTTATTGCTGGAGTGTGTGCCAGGCATGGTTCTGGGTAGTGCCTAGAAAACTGAGCGCCATAAAATGTTTCTTCCTGTTGACACTGTCATATGGTAGGAGAGAGACATAATTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTTTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCACCGCCTGGCTGAGAGACATAATTTTAAAAAGAAAATAAAATTCAACCATTAGTTGATTTTAAATGGGTTTTATTAGTTCTCTTTAAAAATTTTAAATTATTGTTTTATGTGTATGGGTGTTTGCCTGCATGTATTTATGTTTACCACATGTGGGCCTGGGGCCCATGGAGGCCAGAAGAGGGTGTCAGATCCCCTGGGAGTGGAGTTACAGTTGTGAGATGCTGTGAATGAACCAGGTCCTCTAGAAGTGCGGCCGGTGCTCTTGACTGCTGAGCCATTTCTCCAGCTCTTATTGGTTCTTAGTAGTAGGGCCCTCAGTAGGCTATATAGTGGGTTCTGTTAGCATTTACACCTGAAAACCTCATTAGTAACGAAAAGGATAGGCTGGAAAATCACATTGCTTTGCATTAAAGTCTAGTATGGTGAGCTAAGTGTGAAATCCCCAGGTATAAACATTTTCACTTGTCCTTTCCTGTCTTCATAG
Seq C2 exon
GGATTAACGGTCAGAGTGCGAGAGGAGCAGTCCGAGGGAGAGGGTCACCTGAAGCCCTTCCCTGCTGGCAAATCTGGCAGTGGGTCACGGACGACTTAACCACGAGTCAAAACTCTGTGGTAAATACTCCTCAGCTACAGGGCAAGGCTCCCTGCCAGTCCAGGCCAAGGCCATCTGCTCCCGTTTCTGTAGATGAGAACTATATAAAGAGTCATACAATAAGTGTTCCCATCCACTCCGGAAGGCCCCCACTTCCCACTTTGAGAGCCCAGGGAACTTCCCTGACTGAGCGGCAGACTCGGAAGGATCAGTACCACCAAGGCTCCCACAGAGATGAAGCGGGTCAGAGGAAACGGGATGCTCACCCTACAAGTTGGATTCCACGTCCCCGCTCTGATCACAGAGTATGCAAAAGTAAGGGGCGGTGTAGCCCCAGTGATCATGGGAGAGACGGGGTGGAAGTGGTGCCATTCGACCAGAATGGAGGGATTCACACTAGACAGAAAAGCTCCCAACACAGAGAAGCCGTTACCGATCTCTCCAGCTCGGATCCTCACCAAGTGTTAGACTCAGGAGGGAGGGCTTGTGCATGTGTTGAATGTGGGAGAGGCTCCCCTTGTGGCACAGATGGCTGCATTCATCAAGGAGGTCGCACAGGAGAAGAACGGAAGGAATTCGGTCACCAGAGGGTCTGCACGCCAGTGAAACCGTACACCTGTGAGCAGTGCGGAAAAGTCTTTACTTGTAGATCAGCACTTAATGTCCACGTGAAAGTGCACACGAGGGAGAGACCTTACAATTGTGAGACCTGCGGGAGTGCCTTCAGCCAGGCCTCCCACCTCCAGGACCACCAGAGGCTCCACACTGGGGAGAAGCCGTTCAAATGCGATGCCTGCGGCAAGAGTTTCAGTCGCAGTTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACAAGTGCGGGGAGTGTGGGAAGAGCTTCATTTGTAGCTCCAATCTCTACATCCATCAGCGAGTCCACACAGGAGAAAAGCCCTATAAATGCGTGGACTGCGGGAAAGAATTCAGTCGCCCTTCGAGTCTTCAGGCCCATCAGGGCATTCACACCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCTATACTCTGAATTCAAATCTCCAAGTCCACTTGAGAGTCCACACGGGGGAGAAGCCGTACAGTTGTGACGTGTGTGGGAAAGGCTTCAGTCGCTCTTCACAGCTACAGTCCCATCAGAGAGTCCACACGGGGGAGAAGCCTTACAAGTGTGATGTGTGTGGTAAGAGCTTTGGTTGGCGGTCAAATCTTATAATTCATCACAGAATCCACAGCAGTGGTAAACCTTACAAGAGCAAGAGAGATGATAAAAACATCAAGGAGTCCACTCAGGAAAAATGTTCTATAAAATAGTGCTTGAAAAGACTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605:ENSMUST00000077780:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.430
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAATGAGGAGGGCAGCC
R:
ACTGATCCTTCCGAGTCTGCC
Band lengths:
351-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types