HsaEX1044965 @ hg38
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130246859-130260465:-
Coord C1 exon
chrX:130260419-130260465
Coord A exon
chrX:130258909-130258932
Coord C2 exon
chrX:130246859-130247005
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCTGTTACCACTTCTATTAGGTA
3' ss Score
6.1
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGACCTTGCAACTTCATGGATGACGACAAACCTTTTCAACCAAAAA
Seq A exon
GTAGATATTGTGCTCATGTTAGAG
Seq C2 exon
ACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.222 C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138361=DUF4195=PU(14.3=28.0)
Main Inclusion Isoform:
ENST00000370978fB30674
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACTTCATGGATGACGACA
R:
TCTGCCATGGCTCTAGCTCTT
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains