HsaEX6053315 @ hg38
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130246859-130268899:-
Coord C1 exon
chrX:130268762-130268899
Coord A exon
chrX:130260419-130260465
Coord C2 exon
chrX:130246859-130247005
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGTCATGTGTTCGTACTTAGGTG
3' ss Score
10.12
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTCCGCGCTGGAAGTCTCCGGGGGAGTCGCTGTTGCTGAGGCTGTCGCCTGAGGTTTTTCGCGCTCCTCCCTTTCCTCCTCCTCTTTCTCCTCCTCCTTATCCGAACCCCAGTCAGACCGATCTGCTCTGCTCTCG
Seq A exon
GTGACCTTGCAACTTCATGGATGACGACAAACCTTTTCAACCAAAAA
Seq C2 exon
ACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'0-6,'0-1,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.737
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138361=DUF4195=PU(14.3=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTTTCCTCCTCCTCT
R:
TGCCATGGCTCTAGCTCTTCT
Band lengths:
133-180
Functional annotations
There are 1 annotated functions for this event
PMID: 25218447
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002891; ELM sequence: DDDKPF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains