HsaEX6053315 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129380833-129402873:-
Coord C1 exon
chrX:129402736-129402873
Coord A exon
chrX:129394393-129394439
Coord C2 exon
chrX:129380833-129380979
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGTCATGTGTTCGTACTTAGGTG
3' ss Score
10.12
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTCCGCGCTGGAAGTCTCCGGGGGAGTCGCTGTTGCTGAGGCTGTCGCCTGAGGTTTTTCGCGCTCCTCCCTTTCCTCCTCCTCTTTCTCCTCCTCCTTATCCGAACCCCAGTCAGACCGATCTGCTCTGCTCTCG
Seq A exon
GTGACCTTGCAACTTCATGGATGACGACAAACCTTTTCAACCAAAAA
Seq C2 exon
ACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.780
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138361=DUF4195=PU(7.7=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTTTCCTCCTCCTCT
R:
TGCCATGGCTCTAGCTCTTCT
Band lengths:
133-180
Functional annotations
There are 1 annotated functions for this event
PMID: 25218447
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002891; ELM sequence: DDDKPF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)