MmuEX0053163 @ mm9
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45931557-45945310:-
Coord C1 exon
chrX:45944850-45945310
Coord A exon
chrX:45941880-45941926
Coord C2 exon
chrX:45931557-45931706
Length
47 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGTACTTGTTTTTAGTTG
3' ss Score
7.87
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CAGTTTTTAAAGATGTTATATTGTTTGTACATTTTAGCATTTGAATAATACTATATCCAAGTACGTTTAAAAGCTGAAGAAGAGCATTGGAAAAAGTACTGATAATGAAGAACTGCCAACCTCAGCTTTTCCTATTTAATCCCTTTGCTCCAGTTTCCTAAAATTCCCAATATAGGCTGGCCTTTTCAGCCCAGCGTTTCGCCACTTAACATTACCTTTTTATGAAGGGAAGGGATTCTACGCCTTCCTATTCTTCCACTTATTTTATTTTTCTAGGAGAACACTTAGAACCATACAGAATTTTTGGAAGTACTAGGGATCAATTTGTATATATTAATTATAGCTGAATAATTTTTTTCTTTCTGTTTTCAGGGAGGACTTTGTCTTTCTGGAGCCAGGAAGGTGATGTAATTGCTACCACCAAACCTGAGAACTTGAGCTCAATCGCAAGGACCCATATG
Seq A exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
Seq C2 exon
ATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGATCTTTGTTGGAGAGATATCAAGTTCCAAGCCAGCCATTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.485 C2=0.601
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138361=DUF4195=PU(7.8=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGGAGCCAGGAAGGTGA
R:
CTTTCTGCTGCCATGGTTCCA
Band lengths:
145-192
Functional annotations
There are 1 annotated functions for this event
PMID: 25218447
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002891; ELM sequence: DDDKPF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: