MmuEX0053159 @ mm9
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45922298-45941926:-
Coord C1 exon
chrX:45941880-45941926
Coord A exon
chrX:45931557-45931733
Coord C2 exon
chrX:45922298-45922403
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTTGAACATAAGGGT
3' ss Score
3.61
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
Seq A exon
GGTTGTTTCTCTCCTCTTGGAAATTAGATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGATCTTTGTTGGAGAGATATCAAGTTCCAAGCCAGCCATTTCCA
Seq C2 exon
GACTTTACCAAGACTTCACCCCAAGAGGATTCCGGTGCTTGTTCGGTCTCACAGTCAGACTCGACCCAAGATATACCGTCTTCCAACATACTGCAACCGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'4-9,'4-5,7-9
Average complexity
ME(5_5-5_7[100=98])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.472 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF138361=DUF4195=PU(7.8=23.3)
C2:
PF138361=DUF4195=FE(19.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTCAATTTGATGGATAAAGA
R:
CCTCGGTTGCAGTATGTTGGA
Band lengths:
148-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: