MmuEX0053159 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48572746-48588749:-
Coord C1 exon
chrX:48588703-48588749
Coord A exon
chrX:48578380-48578529
Coord C2 exon
chrX:48572746-48572811
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTTGGAAATTAGATA
3' ss Score
4.42
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
Exon sequences
Seq C1 exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
Seq A exon
ATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGATCTTTGTTGGAGAGATATCAAGTTCCAAGCCAGCCATTTCCA
Seq C2 exon
ATATTTTGAACAGATGTAGCCCTGGTTCATCTTCAAAGGGACTAAAGAACGGTTCATTCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'6-17,'6-14,11-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=0.668 C2=0.626
Domain overlap (PFAM):
C1:
NO
A:
PF138361=DUF4195=PU(7.8=27.5)
C2:
PF138361=DUF4195=FE(12.3=100)
Main Skipping Isoform:
ENSMUST00000072292fB4644
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTCAATTTGATGGATAAAGA
R:
TGAATGAACCGTTCTTTAGTCCCT
Band lengths:
106-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types