HsaEX6053316 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129377774-129394439:-
Coord C1 exon
chrX:129394393-129394439
Coord A exon
chrX:129380833-129380979
Coord C2 exon
chrX:129377774-129377839
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTCTTGAAAATTAGACA
3' ss Score
4.17
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GTGACCTTGCAACTTCATGGATGACGACAAACCTTTTCAACCAAAAA
Seq A exon
ACATTTCAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAAGAGCTAGAGCCATGGCAGAAGAAAGTAGAAGAAACTCAGGATGAGGATGACGATGAACTGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCCATTTCAA
Seq C2 exon
ATATTTTGAACAGAGGCCACTCCAGCTCATCTTCAAAAGGAATAAAGAGTGAGCCACACAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.780 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF138361=DUF4195=PU(7.7=28.0)
C2:
PF138361=DUF4195=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCAACTTCATGGATGACG
R:
TGGACTGTGTGGCTCACTCTT
Band lengths:
108-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)