BtaEX6004855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14078020-14080978:-
Coord C1 exon
chrX:14080952-14080978
Coord A exon
chrX:14080778-14080925
Coord C2 exon
chrX:14078020-14078083
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTGGATTCTCTTTTTTAAAATTA
3' ss Score
-3.59
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATGGATTACAAGAAAATATTTAGAAAA
Seq A exon
TTAGATAGTTCCAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGTTGGAACCGTGGCAGAAGAAAGTAGAAACACCACAGGAAGAGGATGATGAGCTGATCTTTGTTGGAGCGGTACCAGGTTCAAAATCACCCACTTCAA
Seq C2 exon
ATATTGTGAACAGGGGTAATCCCAGCTCATCTGCAAAGGAAATAAAGAATGAGACAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
PF138361=DUF4195=PU(8.0=28.0)
C2:
PF138361=DUF4195=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]