MmuALTA0020555-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45931593-45941926:-
Coord C1 exon
chrX:45941880-45941926
Coord A exon
chrX:45931707-45931733
Coord C2 exon
chrX:45931593-45931706
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTTTCCTTTTGAACATAAGGGT
3' ss Score
3.61
Exon sequences
Seq C1 exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
Seq A exon
GGTTGTTTCTCTCCTCTTGGAAATTAG
Seq C2 exon
ATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-5-10,5-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138361=DUF4195=PU(7.8=27.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTCAATTTGATGGATAAAGA
R:
CTTTCTGCTGCCATGGTTCCA
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: