MmuALTA0020555-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48578416-48588749:-
Coord C1 exon
chrX:48588703-48588749
Coord A exon
chrX:48578530-48578556
Coord C2 exon
chrX:48578416-48578529
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTTTCCTTTTGAACATAAGGGT
3' ss Score
3.61
Exon sequences
Seq C1 exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
Seq A exon
GGTTGTTTCTCTCCTCTTGGAAATTAG
Seq C2 exon
ATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-6-14,6-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138361=DUF4195=PU(7.8=27.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTCAATTTGATGGATAAAGA
R:
CTTTCTGCTGCCATGGTTCCA
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types