HsaEX1044989 @ hg38
Exon Skipping
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:29003946-29005260:-
Coord C1 exon
chr6:29005008-29005260
Coord A exon
chr6:29004364-29004434
Coord C2 exon
chr6:29003946-29004214
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAAAAAAAAAAAGAAAGGAGGAA
3' ss Score
-26.71
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AGCATCCATTCATATATTCATTCAGTCAGCTAATTTTTAATCCAGCACATACTATTGCAAGCGCTGTTTTAGGCGTTGAGAATACAACTGTGAACAAGACGACAAAAATTCCTGCCCTCATGGAGCCTAAGAGCCTAGATTTTAGCGAAGGTAGAACCACCGTAAACAATGTATATATTAATAAGTAACTTATGCACCATACTGGAAAATTATAAAGTGCTATAGAGGAAAAGAAGAATTCATGTAAAGCAAG
Seq A exon
GAAGGCAAGGATTGAAGAAAGGAGACCAGTTAGAAGACTACCGCAGTAATGGAAAGGAGGGGAGATAGCAG
Seq C2 exon
GGAAACAAGATGTGAGATCACAGCGGTTTAGTGTTGCTAATGAACCCCAAATCCAGGGCAGTGTTTGACACATTAAGCCAAACAGTAGCGGCACTGTGGGTCAAGAAGGGCCCTTTGGCTGGCACCACCAAAACATGTGTTCTCCAAAGGAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAAGGTAGAACCACCGTA
R:
GCCCTGGATTTGGGGTTCATT
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains