HsaINT1047375 @ hg38
Intron Retention
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:29003946-29005260:-
Coord C1 exon
chr6:29005008-29005260
Coord A exon
chr6:29004215-29005007
Coord C2 exon
chr6:29003946-29004214
Length
793 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCCTTCACCAAATATGCAGGGA
3' ss Score
4.86
Exon sequences
Seq C1 exon
AGCATCCATTCATATATTCATTCAGTCAGCTAATTTTTAATCCAGCACATACTATTGCAAGCGCTGTTTTAGGCGTTGAGAATACAACTGTGAACAAGACGACAAAAATTCCTGCCCTCATGGAGCCTAAGAGCCTAGATTTTAGCGAAGGTAGAACCACCGTAAACAATGTATATATTAATAAGTAACTTATGCACCATACTGGAAAATTATAAAGTGCTATAGAGGAAAAGAAGAATTCATGTAAAGCAAG
Seq A exon
GTAAGGCCCATCAGGATTGGAAGGAGGGGATAGGCTGCAATTTTAAATAAGGCACTCAGAGTAGACCTCCTTGGGAAGATGACCTATAAGAAAACACTTGAAGGAGGCAAGATTATTAGCCATGGAGATCGCTTAAGGTGAAGGGAGCAGCCAATGGAAAGGCCCTAAGATGAAAGAGAAGGAAGGTCGGTATGGCTGAAGATTGAGGGAGTGGGAGAAGAGTAGAAGGTGTTGAGAATGACACATCCTGTAGACTTGTATGCCACTCTTAAGACTTCAGCTCTTATTTTGGGTGAGCAGGAGAGGAAGTTAGAAGTCACGGGCACATTCAGTAGGGCCTTGTATACCTCGGTAAGGACTTCAGGTTTTATTTTAAGTATGAACCACTGGAGAGTTTTCAGCAGAGCGATGAAATGATCCAACTCAAGTTGTAAACGGACTACTCAGACTGCCCTATTAAGAAAGGAGGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCCGCCTGGGCCACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGGAGGAAGGCAAGGATTGAAGAAAGGAGACCAGTTAGAAGACTACCGCAGTAATGGAAAGGAGGGGAGATAGCAGGTGATGGTGGCTCAGACAAGGGTGGTAGCCGTTGAGATTGTATTCTGGATATGTTCACATTTTCAGTTTGACTTCGTGCCTCAGGTTCTCAGTGACTCCCTATTTTTTCCTGTGGTCACATTCCTCTTTTCCCTTCACCAAATATGCAG
Seq C2 exon
GGAAACAAGATGTGAGATCACAGCGGTTTAGTGTTGCTAATGAACCCCAAATCCAGGGCAGTGTTTGACACATTAAGCCAAACAGTAGCGGCACTGTGGGTCAAGAAGGGCCCTTTGGCTGGCACCACCAAAACATGTGTTCTCCAAAGGAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935:ENST00000377179:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAAGGTAGAACCACCGTA
R:
TCCACTGCTGTCCTGGTTTCT
Band lengths:
342-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains