HsaEX1045031 @ hg38
Exon Skipping
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:HGNC:16367]
Coordinates
chr19:36850361-36851904:+
Coord C1 exon
chr19:36850361-36850664
Coord A exon
chr19:36851608-36851723
Coord C2 exon
chr19:36851830-36851904
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTTTGTGACTTCAGCCA
3' ss Score
4.87
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
GGGTGAAAGAAAGCTTGCCCCAGAGGACTTAAACAGGCAAGAAGGACTTGGTTAAAGACTATTGCAATAGTCAACTTCCAATACAACAGCAGCTGGAGATTTATAGCTAACGGGCTGGGTGAAGGAGTTAAAGGATGCTAAATTACTAAGAGGAAGTTAAGTATCAAGAGTGGGGGGATTGTTACTAAACTGGCTTAGCTGGATTCTTGCTGAAGTGCTGTTCGCAGGCTATGGAGGAGGCCTGGCCAAGCAAAAAGGGCTCAGAGGAGCCTGACTAAAGCTTGGTCTAGGGACTCCTTGTCAG
Seq A exon
CCATTGGAGACCCCTGTGAGCTCAGGGACAGGTTCTGCCCAGAACGGCATTGACCCTACCGTTGTCTGTGATGCCCGGATTAAGCAGGATGCCCTAGACTTCTCTGACCTTCCTCT
Seq C2 exon
CCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGTGAAGGAGTTAAAGG
R:
GCCTTGTGGATGTTCAACAGC
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains