HsaINT1047415 @ hg38
Intron Retention
Gene
ENSG00000251247 | ZNF345
Description
zinc finger protein 345 [Source:HGNC Symbol;Acc:HGNC:16367]
Coordinates
chr19:36850890-36851904:+
Coord C1 exon
chr19:36850890-36850968
Coord A exon
chr19:36850969-36851829
Coord C2 exon
chr19:36851830-36851904
Length
861 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
ACTGCTTTCTCCTTCCTCAGCCC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GGCCTTGGGGCTTTGTGAGATAGCTAGGGTCGACTTGTGTGGATTCTAGTAGAACGGAGCTGACCCTATCCGAACAGGC
Seq A exon
GTAAGTGAGGCGGCTCGGAGCCTGGCGCGACAGGAACTCCCGACCTGTGTGGGCTGCGTGGGGAACAGGCTAAGGAGCGATTGTGAGGAGTGTGTACGGTTGTGACTGGGGGCGTGTGTCTGTGCGACCGTGTATGGAACTGTGAGGGCGGGGAGGAGGACTTTTTGTTTATGTTTGTGCGGGTGTGAGTAGAGTTTAATTGTGACCGGGTTGGGCACTGTGTTTGCGAGTGTGAGGTTCCTGGACCGCGGTTGTGACTGTATGTCCCCTTGGGGTGTGTGTGTGTGTGTTTACTACCATTTGCCGAACTGTGTGTAGTATGCCTTAATTTTGAGGTTTGTGGCTGCTTCCGTGTGTGTGTGTGCGCGCGCGTTGGTGATATTGTTGATGGAGGGTGCGTGTGAATTTGTTGTCATTGTGACCCCAAGGTGTATGTCACTGGGAATTTGAGAGATGCCCACGGACTCTGTGGTTGTGTCCGTGTCTACCCCCGTGGTGTGTATGAGTGTGTGATTGTGTGTTGTGTTTAGGTTTGGGGTGCCTGTGACGTTTATGTCCCTGCGGTGTGAGTGAGTTTGTGTGACTATGTGTCCGTATAGCCAATGTAGGTATGGGGAGTCTTTGTCTTTGTGACTTCAGCCATTGGAGACCCCTGTGAGCTCAGGGACAGGTTCTGCCCAGAACGGCATTGACCCTACCGTTGTCTGTGATGCCCGGATTAAGCAGGATGCCCTAGACTTCTCTGACCTTCCTCTGTAGGTGATGGGCAGTAGGGGCTGAGCAAAGATAACTTCTGACATAGTCAAACCAACTCCCTCTCAGAAGAACCTGATGTTTCCTGACTGCTTTCTCCTTCCTCAG
Seq C2 exon
CCCTGCCCTGCTTGGATAGAGGCCTCCGAACAGGAGTAAAGAATGGCTGTTGAACATCCACAAGGCACCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251247:ENST00000420450:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains