HsaEX1045043 @ hg38
Exon Skipping
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr5:178726999-178729073:-
Coord C1 exon
chr5:178728990-178729073
Coord A exon
chr5:178727225-178727328
Coord C2 exon
chr5:178726999-178727125
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTCTACCCATCTCTTACAGTGG
3' ss Score
7.98
5' ss Seq
ATAGTATGG
5' ss Score
0.05
Exon sequences
Seq C1 exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
Seq A exon
TGGCTGCACTAGGCCTGAATCTCACTGTGTGCTGCTCAGTATACATTTGTTACTGGCCAATTATTCATTAAACGAATGATCTGGAACCTTCAGAAGCTTGAATA
Seq C2 exon
GTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTACCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000335815fB30709
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCTTCTGGAGACTGCG
R:
CCAGTGAGACCAGGTTCCTAT
Band lengths:
211-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains