HsaEX0073505 @ hg38
Exon Skipping
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr5:178726999-178730702:-
Coord C1 exon
chr5:178730556-178730702
Coord A exon
chr5:178728990-178729073
Coord C2 exon
chr5:178726999-178727125
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCTTTTTCTTCTCAGATC
3' ss Score
9.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCGGCGCGCCGCGGGGTGAGCGGCGCCGGGCCTGAGGTCGCCCAGACGCCGTCGGGGCGGAGCCGGGTCGCGAGGCTGCATCCCGGCCGGCGGTTCCGGAGCCTCGCGGCTGGGGAGGCGCGGCCCGGGACGCTCGAGCTTAGGGAG
Seq A exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
Seq C2 exon
GTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTACCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131-'0-3,'0-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCTCGAGCTTAGGGAG
R:
CCAGTGAGACCAGGTTCCTAT
Band lengths:
147-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development