MmuEX0053251 @ mm9
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:50872759-50874488:+
Coord C1 exon
chr11:50872759-50872904
Coord A exon
chr11:50873574-50873656
Coord C2 exon
chr11:50874362-50874488
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTCCACCCTCAGATC
3' ss Score
12.24
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CAAGATCTGACCCCCCCGTGAGCCTTCGCGGGTCTTAGGGCGTCTGTGGCGCGGCTCGAGGCTAGGGGCCAAGGTCCCCGTGCAGAGTCCTTACCCGCGGCGGCTCAGAGCATATGTGAGGCGCGGCGGGAGCCGGAGGAGGGAAG
Seq A exon
ATCCTCCCTCATCTTCACCCATCTTTGGAAGAAGAACCTTCAGAAAGAAGATGGCTCCTGAGCAATGGGAAGCGACATCTCAG
Seq C2 exon
GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-'0-5,'0-3,3-5
Average complexity
ME(0_1-3_3[100=100])
Mappability confidence:
100%=67=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCAGAGCATATGTGAGG
R:
GAGGCCAGGTTGCTGTAGTTC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: