MmuEX0053250 @ mm9
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:50872759-50874488:+
Coord C1 exon
chr11:50872759-50872904
Coord A exon
chr11:50873288-50873543
Coord C2 exon
chr11:50874362-50874488
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTTCAATTTCCTTCCCAAAGGGG
3' ss Score
6.41
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
CAAGATCTGACCCCCCCGTGAGCCTTCGCGGGTCTTAGGGCGTCTGTGGCGCGGCTCGAGGCTAGGGGCCAAGGTCCCCGTGCAGAGTCCTTACCCGCGGCGGCTCAGAGCATATGTGAGGCGCGGCGGGAGCCGGAGGAGGGAAG
Seq A exon
GGGCTGGAAAGTGCCTGCTGAGATGTGGTGAACAGTCTAAGGGTGTTCACATGGGAGCTCAGTGAGTCCCCTCGGTTATGGAGTACAGTGTCGCCTGAATCTTGCTTCTGGACATCCACGGACAAGAAGACTGGTGACTTGTCGATTCTCTGATGCCCACCCCCAGCTCCTGGTTCCCTCTCTTGAGGCAGAAGAGCCAGGCTCAGATGATGGGACACTTTCGGAGATGCTGCTTCTGACAGGTGCCGAGCAACAG
Seq C2 exon
GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-'0-5,'0-0,1-5
Average complexity
ME(0_1-3_3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCGCGGGTCTTAGG
R:
CAGCGAGGCCAGGTTGCT
Band lengths:
252-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: