MmuEX0053250 @ mm10
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:51059257-51060154:+
Coord C1 exon
chr11:51059257-51059402
Coord A exon
chr11:51059786-51059918
Coord C2 exon
chr11:51060072-51060154
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTTCAATTTCCTTCCCAAAGGGG
3' ss Score
6.41
5' ss Seq
CTGGTGACT
5' ss Score
3.06
Exon sequences
Seq C1 exon
CAAGATCTGACCCCCCCGTGAGCCTTCGCGGGTCTTAGGGCGTCTGTGGCGCGGCTCGAGGCTAGGGGCCAAGGTCCCCGTGCAGAGTCCTTACCCGCGGCGGCTCAGAGCATATGTGAGGCGCGGCGGGAGCCGGAGGAGGGAAG
Seq A exon
GGGCTGGAAAGTGCCTGCTGAGATGTGGTGAACAGTCTAAGGGTGTTCACATGGGAGCTCAGTGAGTCCCCTCGGTTATGGAGTACAGTGTCGCCTGAATCTTGCTTCTGGACATCCACGGACAAGAAGACTG
Seq C2 exon
ATCCTCCCTCATCTTCACCCATCTTTGGAAGAAGAACCTTCAGAAAGAAGATGGCTCCTGAGCAATGGGAAGCGACATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCGCGGGTCTTAGG
R:
GATGTCGCTTCCCATTGCTCA
Band lengths:
205-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types