BtaEX6040026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006428 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr7:41173637-41179540:-
Coord C1 exon
chr7:41179380-41179540
Coord A exon
chr7:41178306-41178393
Coord C2 exon
chr7:41173637-41173763
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTTGTCTTCCCTCAGATC
3' ss Score
11.41
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACTTGGGGTGCCCAGCTTTTGCAGCTGGCGTGAGCAGCCACCCGACCTGAGGTTGGCCCAGGCAGCACCTCGGGCGAGTCCAAACCCCAAGCTGCTGTCAGGCTGTGGCAGTTCCGGAGCCTCCCGCCTGCAGCCCACGGAACCCCAGAGGCCTAGGAGAG
Seq A exon
ATCTGGCTTCTGGAGACTTCACCCATCCTCAGGGGACACTGCCCAGAAAGAAGATATGGCTACTGAACAGAGGGAAGCAAGGTCTCAG
Seq C2 exon
GTGTCAGTGACGTTCGAAGATGTGGCTGTGCTCTTTACACGGGATGAGTGGAGAAAGCTGGCTCCTCCTCAGAGAAACTTGTACCAAGATGTGATGCTGGAGAACTATAATAATCTTGTCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006428-'0-4,'0-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.455 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3),PF086325=Zds_C=WD(100=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCCAAACCCCAAGCTG
R:
AAGTTTCTCTGAGGAGGAGCCA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]